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Platform GPL16903 Query DataSets for GPL16903
Status Public on Aug 10, 2013
Title Agilent-034032 PanTro2_HD_1M_4
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pan troglodytes
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034032 or 2534032.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113473
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 PtCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 PanTro2_chr5:174397409-174397454 FALSE chr5:174397409-174397454 chr5 NC_006472.2 174397409 174397454
5 534 1816 PanTro2_chr6:10534730-10534785 FALSE chr6:10534730-10534785 chr6 NC_006473.2 10534730 10534785
6 534 1814 PanTro2_chr6:66020841-66020892 FALSE chr6:66020841-66020892 chr6 NC_006473.2 66020841 66020892
7 534 1812 PanTro2_chr5:138145602-138145656 FALSE chr5:138145602-138145656 chr5 NC_006472.2 138145602 138145656
8 534 1810 PanTro2_chr6:42367809-42367856 FALSE chr6:42367809-42367856 chr6 NC_006473.2 42367809 42367856
9 534 1808 PanTro2_chr5:152891910-152891965 FALSE chr5:152891910-152891965 chr5 NC_006472.2 152891910 152891965
10 534 1806 PanTro2_chr5:176062288-176062333 FALSE chr5:176062288-176062333 chr5 NC_006472.2 176062288 176062333
11 534 1804 PanTro2_chr6:127299864-127299914 FALSE chr6:127299864-127299914 chr6 NC_006473.2 127299864 127299914
12 534 1802 PanTro2_chr5:137830860-137830920 FALSE chr5:137830860-137830920 chr5 NC_006472.2 137830860 137830920
13 534 1800 PanTro2_chr5:116964201-116964253 FALSE chr5:116964201-116964253 chr5 NC_006472.2 116964201 116964253
14 534 1798 PanTro2_chr5:64029292-64029347 FALSE chr5:64029292-64029347 chr5 NC_006472.2 64029292 64029347
15 534 1796 PanTro2_chr5:129859538-129859598 FALSE chr5:129859538-129859598 chr5 NC_006472.2 129859538 129859598
16 534 1794 PanTro2_chr6:100877939-100877999 FALSE chr6:100877939-100877999 chr6 NC_006473.2 100877939 100877999
17 534 1792 PanTro2_chr5:110905212-110905268 FALSE chr5:110905212-110905268 chr5 NC_006472.2 110905212 110905268
18 534 1790 PanTro2_chr5:84863781-84863827 FALSE chr5:84863781-84863827 chr5 NC_006472.2 84863781 84863827
19 534 1788 PanTro2_chr6:121254203-121254263 FALSE chr6:121254203-121254263 chr6 NC_006473.2 121254203 121254263
20 534 1786 PanTro2_chr5:117859308-117859363 FALSE chr5:117859308-117859363 chr5 NC_006472.2 117859308 117859363

Total number of rows: 974016

Table truncated, full table size 111864 Kbytes.




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