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Platform GPL16901 Query DataSets for GPL16901
Status Public on Aug 10, 2013
Title Agilent-034030 PanTro2_HD_1M_2
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pan troglodytes
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034030 or 2534030.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113471
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 PtCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 PanTro2_chr2a:86549830-86549878 FALSE chr2a:86549830-86549878 chr2a NC_006469.2 86549830 86549878
5 534 1816 PanTro2_chr2b:236436684-236436731 FALSE chr2b:236436684-236436731 chr2b NC_006470.2 236436684 236436731
6 534 1814 PanTro2_chr2b:152366445-152366501 FALSE chr2b:152366445-152366501 chr2b NC_006470.2 152366445 152366501
7 534 1812 PanTro2_chr2b:173234844-173234903 FALSE chr2b:173234844-173234903 chr2b NC_006470.2 173234844 173234903
8 534 1810 PanTro2_chr2b:205103428-205103487 FALSE chr2b:205103428-205103487 chr2b NC_006470.2 205103428 205103487
9 534 1808 PanTro2_chr3:38182427-38182487 FALSE chr3:38182427-38182487 chr3 NC_006490.2 38182427 38182487
10 534 1806 PanTro2_chr3:22348089-22348136 FALSE chr3:22348089-22348136 chr3 NC_006490.2 22348089 22348136
11 534 1804 PanTro2_chr3:43477080-43477127 FALSE chr3:43477080-43477127 chr3 NC_006490.2 43477080 43477127
12 534 1802 PanTro2_chr2b:223067759-223067813 FALSE chr2b:223067759-223067813 chr2b NC_006470.2 223067759 223067813
13 534 1800 PanTro2_chr2b:185822454-185822514 FALSE chr2b:185822454-185822514 chr2b NC_006470.2 185822454 185822514
14 534 1798 PanTro2_chr2b:190972785-190972840 FALSE chr2b:190972785-190972840 chr2b NC_006470.2 190972785 190972840
15 534 1796 PanTro2_chr3:15049388-15049447 FALSE chr3:15049388-15049447 chr3 NC_006490.2 15049388 15049447
16 534 1794 PanTro2_chr2a:111822857-111822902 FALSE chr2a:111822857-111822902 chr2a NC_006469.2 111822857 111822902
17 534 1792 PanTro2_chr2b:218165492-218165552 FALSE chr2b:218165492-218165552 chr2b NC_006470.2 218165492 218165552
18 534 1790 PanTro2_chr2b:246815741-246815788 FALSE chr2b:246815741-246815788 chr2b NC_006470.2 246815741 246815788
19 534 1788 PanTro2_chr2b:241464603-241464656 FALSE chr2b:241464603-241464656 chr2b NC_006470.2 241464603 241464656
20 534 1786 PanTro2_chr2a:83170695-83170753 FALSE chr2a:83170695-83170753 chr2a NC_006469.2 83170695 83170753

Total number of rows: 974016

Table truncated, full table size 113996 Kbytes.




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