NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL16581 Query DataSets for GPL16581
Status Public on Jul 28, 2013
Title Agilent-020128 Ca21_GE_2.0 [Orf version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Candida albicans
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description This is an expression array designed against the assembly 21 Orf list, including the alpha locus. Most orfs have 2 probes each, while 860 orfs which had discordant values between original probes have been assigned 5 probes/orf to identify non-discordant probes. "

Arrays of this design have barcodes that begin with 16020128 or 2520128.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software."

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface)."

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions."
 
Submission date Jan 31, 2013
Last update date Jul 28, 2013
Contact name Changbin Chen
E-mail(s) Changbin.Chen@ucsf.edu
Phone 4154768992
Fax 4154768201
Organization name University of California, San Francisco
Department Department of Microbiology & Immunology
Lab Dr. Suzanne Noble LAB
Street address HSE450, 513 Parnassus Avenue
City San Francisco
State/province California
ZIP/Postal code 94143
Country USA
 
Samples (16) GSM1075172, GSM1075173, GSM1075174, GSM1075175, GSM1075176, GSM1075177 
Series (1)
GSE43972 Passage through the mammalian gut triggers a phenotypic switch required for Candida albicans commensalism

Data table header descriptions
ID Agilent feature number
ORF
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SPOT_ID

Data table
ID ORF GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SPOT_ID
orf19.10 CaO19.10 ALK8 orf19.10|CGDID|CAL0000502 chrR:1556788-1555241 Alkane-inducible cytochrome P450; catalyzes hydroxylation of lauric acid to hydroxylauric acid; overproduction causes fluconazole resistance in a wild-type background and causes multidrug resistance in a cdr1 cdr2 double mutant background
orf19.100 CaO19.100 orf19.100|CGDID|CAL0002961 chr6:0195363-0194311 Predicted ORF in Assemblies 19, 20 and 21
orf19.1002 CaO19.1002 orf19.1002|CGDID|CAL0001015 chr1:2339615-2337723 Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction)
orf19.1005 CaO19.1005 orf19.1005|CGDID|CAL0001021 chr1:2342421-2340613 Predicted ORF in Assemblies 19, 20 and 21
orf19.1007 CaO19.1007 orf19.1007|CGDID|CAL0001024 chrR:1136516-1135458 Putative transcription factor with bZIP DNA-binding motif
orf19.1008 CaO19.1008 orf19.1008|CGDID|CAL0001025 chrR:1136836-1137150 Predicted ORF in Assemblies 19, 20 and 21
orf19.1009 CaO19.1009 orf19.1009|CGDID|CAL0001026 chrR:1137137-1137457 Predicted ORF in Assemblies 19, 20 and 21
orf19.101 CaO19.101 orf19.101|CGDID|CAL0002962 chr6:0195986-0197026 Predicted ORF in Assemblies 19, 20 and 21
orf19.1010 CaO19.1010 MNT3 orf19.1010|CGDID|CAL0001038 chrR:1138174-1139310 Protein with similarity to mannosyltransferases; transcription is elevated in cyr1, chk1, nik1, and sln1 homozygous null mutants; fungal-specific (no human or murine homolog)
orf19.1011 CaO19.1011 orf19.1011|CGDID|CAL0001040 chrR:1141367-1139385 Predicted ORF in Assemblies 19, 20 and 21
orf19.1012 CaO19.1012 orf19.1012|CGDID|CAL0001042 chrR:1142658-1143119 Predicted ORF in Assemblies 19, 20 and 21
orf19.102 CaO19.102 orf19.102|CGDID|CAL0002963 chr6:0198348-0197098 Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction)
orf19.1026 CaO19.1026 orf19.1026|CGDID|CAL0001085 chr1:0804071-0803079 Predicted ORF in Assemblies 19, 20 and 21
orf19.1027 CaO19.1027 PDR16 orf19.1027|CGDID|CAL0001086 chr1:0801804-0802913 Phosphatidylinositol transfer protein; increased transcription correlates with CDR1 and CDR2 overexpression and azole resistance; induced by fluphenazine, 17-beta-estradiol, ethynyl estradiol, nitric oxide; farnesol-downregulated in biofilm
orf19.1028 CaO19.1028 orf19.1028|CGDID|CAL0001087 chr1:0799432-0798254 Predicted ORF in Assemblies 19, 20 and 21
orf19.1029 CaO19.1029 orf19.1029|CGDID|CAL0001088 chr1:0797230-0798162 Predicted ORF in Assemblies 19, 20 and 21
orf19.103 CaO19.103 KAR5 orf19.103|CGDID|CAL0002964 chr6:0198748-0199125 Protein of unknown function; induced by alpha factor
orf19.1030 CaO19.1030 orf19.1030|CGDID|CAL0001110 chr1:0796896-0795616 Predicted ORF in Assemblies 19, 20 and 21
orf19.1031 CaO19.1031 HMG1 orf19.1031|CGDID|CAL0001113 chr1:0793655-0790434 HMG-CoA reductase; enzyme of sterol pathway; inhibited by lovastatin; gene not transcriptionally regulated in response to lovastatin and fluconazole
orf19.1032 CaO19.1032 SKO1 orf19.1032|CGDID|CAL0001116 chr1:0788367-0790213 Protein similar to S. cerevisiae Sko1p; mutation causes no obvious phenotype; induced by osmotic stress via Hog1p

Total number of rows: 6099

Table truncated, full table size 970 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16581_020128_D_GEO_20080428.txt.gz 1.1 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap