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Platform GPL16415 Query DataSets for GPL16415
Status Public on Mar 01, 2013
Title Agilent-037970 Listeria monocytogenes EGD-e [Probe Name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Listeria monocytogenes EGD-e
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16037970 or 2537970.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

 
Submission date Dec 20, 2012
Last update date Mar 01, 2013
Contact name wang liang
E-mail(s) wangliangkexue@163.com
Organization name BioChainBJ
Street address 7A North Yongchang Road BDA
City Beijing
ZIP/Postal code 100176
Country China
 
Samples (15) GSM1055659, GSM1055660, GSM1055661, GSM1055662, GSM1055663, GSM1055664 
Series (1)
GSE43052 The whole genome transcription analysis reveals the regulatory network for Listeria monocytogenes biofilm formation is modified in the prfA deletion mutant

Data table header descriptions
ID Agilent Probe NAME
GeneSymbol
GO
PATHWAY
Description
ORF ORF Name
PROTEIN_ID
PT_GI
GENE_ID
SEQUENCE

Data table
ID GeneSymbol GO PATHWAY Description ORF PROTEIN_ID PT_GI GENE_ID SEQUENCE
A_1000002_P00001 VBILisMon69206_0001 Chromosomal replication initiator protein DnaA lmo0001 NP_463534.1 16802049 984365 TAGTGGTATTCAAGAAGCAGTCGGTGAATATTTCCACGTTCGTTTAGAAGATTTTAAAGC
A_1000002_P00002 VBILisMon69206_0002 GO:0003887(DNA-directed DNA polymerase activity) 00240(Pyrimidine metabolism);00230(Purine metabolism) DNA polymerase III beta subunit lmo0002 NP_463535.1 16802050 984379 AAAGATGCAGCCAATCCAAATGAAATTTTACAATTAATCACGCCGGTTAGAACTTACTAA
A_1000002_P00003 VBILisMon69206_0003 hypothetical protein lmo0003 NP_463536.1 16802051 984420 TTGTTATCGGATTTGTTTTGTCGCTTTATATTGGATACGTAGGGCTTTGGTGGGCTACAC
A_1000002_P00004 VBILisMon69206_0004 hypothetical protein lmo0004 NP_463537.1 16802052 984453 AATGGCGATGTTATCTTAGTTCCCGGTGTTGGAAAAGTGAAAATTGAGCAAGGAAAATAA
A_1000002_P00005 VBILisMon69206_0005 DNA recombination and repair protein RecF lmo0005 NP_463538.1 16802053 984623 GAAGGAAAAGTACAAACCTTTGTAACGACAACAAGTACGAGCGGAATCGACCATGAAACG
A_1000002_P00006 VBILisMon69206_0006 GO:0003918(DNA topoisomerase (ATP-hydrolyzing) activity) DNA gyrase subunit B lmo0006 NP_463539.1 16802054 984708 AATATCAAAGACGCTATTGATGCCGATGAAACTTTTGAAATGTTGATGGGTGACCGCGTG
A_1000002_P00007 VBILisMon69206_0007 GO:0003918(DNA topoisomerase (ATP-hydrolyzing) activity) DNA gyrase subunit A lmo0007 NP_463540.1 16802055 984791 CAGTATCACAAACTGGTCGTAGCGCAATGGGTGTTAAACTAATTCGTCTTGATGAAGATG
A_1000002_P00008 VBILisMon69206_0008 GO:0008152(metabolic process)|GO:0003824(catalytic activity) 00440(Phosphonate and phosphinate metabolism);00520(Amino sugar and nucleotide sugar metabolism);00600(Sphingolipid metabolism);00513(High-mannose type N-glycan biosynthesis);00564(Glycerophospholipid metabolism) Cardiolipin synthetase lmo0008 NP_463541.1 16802056 984834 GGAAAACAAACCATTATTGACTCGTATAAAAGAAGTTCTATCCAGTTTACTATCACCAAT
A_1000002_P00009 VBILisMon69206_0009 GO:0004145(diamine N-acetyltransferase activity) 00330(Arginine and proline metabolism) Spermidine N1-acetyltransferase lmo0009 NP_463542.1 16802057 984861 ACTTATCATGATGCTATTAGAATGTGTATTTTCCAACATCAATACCGAGAAATGGATATT
A_1000002_P00010 VBILisMon69206_0011 GO:0004496(mevalonate kinase activity) 00900(Terpenoid backbone biosynthesis) Mevalonate kinase lmo0010 NP_463543.1 16802058 984924 AGAGAAATTAATTAAAGTAGCTAGAAGTAATGGCGCGGACGGGGCAAAACTTACTGGTGG
A_1000002_P00011 VBILisMon69206_0012 GO:0004163(diphosphomevalonate decarboxylase activity) 00900(Terpenoid backbone biosynthesis) Diphosphomevalonate decarboxylase lmo0011 NP_463544.1 16802059 984930 AAAGTTATTTGTGAGCGTGCAAATGAAAATATCGTAGCAGAGAAGTTGTCAGGTTTGGCT
A_1000002_P00012 VBILisMon69206_0013 GO:0004631(phosphomevalonate kinase activity) 00900(Terpenoid backbone biosynthesis) Phosphomevalonate kinase lmo0012 NP_463545.1 16802060 984932 CTGGCGTAAATATTGAAACAAGCTTGCTAAAAGAACTCGCGGACTCAGCTGAAAACATGG
A_1000002_P00013 VBILisMon69206_0014 GO:0006118(electron transport)|GO:0016021(integral to membrane)|GO:0004129(cytochrome-c oxidase activity)|GO:0008827(cytochrome o ubiquinol oxidase activity)|GO:0016020(membrane)|GO:0005507(copper ion binding) AA3-600 quinol oxidase subunit II lmo0013 NP_463546.1 16802061 984936 AAACACCGCGAAGATGAAATGAAGAAAATGGAAGAAGACATCCAAACAAATGAATTCAAT
A_1000002_P00014 VBILisMon69206_0015 GO:0016020(membrane)|GO:0004129(cytochrome-c oxidase activity)|GO:0006118(electron transport) AA3-600 quinol oxidase subunit I lmo0014 NP_463547.1 16802062 984962 TTTTAGGATGTATGATTTATCGTTCATTCCAAAATAACGATGGTTACCACGTTGAAGTGG
A_1000002_P00015 VBILisMon69206_0016 GO:0016020(membrane)|GO:0004129(cytochrome-c oxidase activity)|GO:0006118(electron transport) AA3-600 quinol oxidase subunit IIII lmo0015 NP_463548.1 16802063 984980 TTGGATGTTGTGTGGATTTTCATTTTCACCGGTGTCTATTTGCTAGGGATGGTGAACTAA
A_1000002_P00016 VBILisMon69206_0017 GO:0006118(electron transport)|GO:0016021(integral to membrane) AA3-600 quinol oxidase subunit IV lmo0016 NP_463549.1 16802064 984983 ACAGAAGGCCGCGATGGTAAAATCCAAATCGGTAATATTTTATTCGCAGCATTTATTGCG
A_1000002_P00017 VBILisMon69206_0018 Capsule biosynthesis protein capA lmo0017 NP_463550.1 16802065 984984 GACAGCACAATTAAATTACCTGCAATCCATTTCTCCAAATGCAACCATTAATAGTAATGG
A_1000002_P00018 VBILisMon69206_0019 GO:0008706(6-phospho-beta-glucosidase activity)|GO:0008422(beta-glucosidase activity) 00460(Cyanoamino acid metabolism);00940(Phenylpropanoid biosynthesis);00500(Starch and sucrose metabolism);00010(Glycolysis / Gluconeogenesis) Beta-glucosidase; 6-phospho-beta-glucosidase lmo0018 NP_463551.1 16802066 984990 GCTGGCAAATTGATCCACTAGGTCTACGTATTACTATGAATACAATTTACGACCGTTACC
A_1000002_P00019 VBILisMon69206_0020 hypothetical protein lmo0019 NP_463552.1 16802067 985005 TCGCAAAGTTACTTTAATACATGTTGGAGCAAACAAGCAAAACGCGCGATTTCGTATTAA
A_1000002_P00020 VBILisMon69206_0021 GO:0008324(cation transmembrane transporter activity)|GO:0006813(potassium ion transport)|GO:0045449(regulation of transcription)|GO:0003677(DNA binding)|GO:0005622(intracellular)|GO:0003700(transcription factor activity)|GO:0009058(biosynthetic process)|GO:0030528(transcription regulator activity) "Transcriptional regulator, GntR family" lmo0020 NP_463553.1 16802068 985023 AAATTGATACTGAATTGCCACTTTACCATATTGAAAGAATAACTTATGTGCCTGAGGGGC

Total number of rows: 2866

Table truncated, full table size 622 Kbytes.




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Supplementary file Size Download File type/resource
GPL16415_037970_D_GEO_20111220.txt.gz 506.0 Kb (ftp)(http) TXT

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