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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 15, 2012 |
| Title |
NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1] |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
see manufacturer's website
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| |
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| Description |
Build: HG19, NCBI 37
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| Submission date |
Nov 14, 2012 |
| Last update date |
Nov 15, 2012 |
| Organization |
NimbleGen Systems, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov
|
| Phone |
608-218-7600
|
| URL |
http://www.nimblegen.com/
|
| Street address |
504 S. Rosa Road
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53719 |
| Country |
USA |
| |
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| Samples (175)
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GSM1063579, GSM1063580, GSM1063581, GSM1063582, GSM1063583, GSM1063584
GSM1063585, GSM1063586, GSM1063587, GSM1063588, GSM1063589, GSM1063590, GSM1063591, GSM1063592, GSM1063593, GSM1063594, GSM1063595, GSM1063596, GSM1063597, GSM1063598, GSM1080043, GSM1080044, GSM1080045, GSM1080046, GSM1080047, GSM1080048, GSM1080049, GSM1080050, GSM1080051, GSM1080052, GSM1080053, GSM1080054, GSM1080055, GSM1080056, GSM1080057, GSM1080086, GSM1080087, GSM1080088, GSM1080089, GSM1080090, GSM1080091, GSM1080092, GSM1080093, GSM1080094, GSM1561842, GSM1561843, GSM1561844, GSM1561845, GSM1561846, GSM1561847, GSM1561848, GSM1561849, GSM1561850, GSM1561851, GSM1561852, GSM1561853, GSM1561854, GSM1561855, GSM1561856, GSM1561857, GSM1561858, GSM1561859, GSM1635886, GSM1635887, GSM1635888, GSM1635889, GSM1635890, GSM1635891, GSM1635892, GSM1635893, GSM1635894, GSM1661380, GSM1708580, GSM1708581, GSM1708582, GSM1708583, GSM1827581, GSM1827582, GSM1827583, GSM1827584, GSM1827585, GSM1827586, GSM1836792, GSM1836793, GSM1836794, GSM1836795, GSM1836796, GSM1836797, GSM2228804, GSM2228805, GSM2228806, GSM2228807, GSM2228808, GSM2228809, GSM2228810, GSM2228811, GSM2228812, GSM2228813, GSM2228814, GSM2228815, GSM2230688, GSM2230689, GSM2230690, GSM2230691, GSM2230692, GSM2230693, GSM2230694, GSM2230695, GSM2230696, GSM2230697, GSM2230698, GSM2230699, GSM2230700, GSM2230701, GSM2230702, GSM2230703, GSM2230704, GSM2230705, GSM4753201, GSM4753202, GSM4753203, GSM4753204, GSM4753205, GSM4753206, GSM4753207, GSM4753208, GSM4753209, GSM4753210, GSM4753211, GSM4753212, GSM4753213, GSM4753214, GSM4753215, GSM4753216, GSM4753217, GSM4753218, GSM4753219, GSM4753220, GSM4753221, GSM4753222, GSM4753223, GSM4753224, GSM4753225, GSM4753226, GSM4753227, GSM4753228, GSM4753229, GSM4753230, GSM4753231, GSM4753232, GSM4753233, GSM4753234, GSM4753235, GSM4753236, GSM4753237, GSM4753238, GSM4753239, GSM4753240, GSM4753241, GSM4753242, GSM4753243, GSM4753244, GSM4753245, GSM4753246, GSM4753247, GSM4753248, GSM4753249, GSM4753250, GSM4753251, GSM4753252, GSM4753253, GSM4753254, GSM4753255, GSM4753256, GSM4753257
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| Series (16)
|
| GSE43435 |
Thymidine Kinase and mtDNA Depletion in Human Cardiomyopathy: Epigentic and Translational Evidence for Energy Starvation |
| GSE44173 |
Sodium arsenite induced DNA methylation changes in A549 human epithelial lung carcinoma cells |
| GSE44174 |
Sodium arsenite induced changes in A549 human epithelial lung carcinoma cells |
| GSE63989 |
Dynamic interplay between the transcriptome and methylome in response to oxidative and alkylating stress |
| GSE67005 |
Aflatoxin B1 exposure induces epigenetic mechanisms in primary human hepatocytes revealing novel biological processes associated with hepatocellular carcinoma (MeDIP) |
| GSE67078 |
Aflatoxin B1 exposure induces epigenetic mechanisms in primary human hepatocytes revealing novel biological processes associated with hepatocellular carcinoma |
| GSE68028 |
The alteration of DNA methylation driven by HIV infection based on a pair of monozygotic twins (MeDIP-chip) |
| GSE69769 |
MeDIP and hMeDIP assays using human placentas of obese and lean (healthy weight) pregnancies |
| GSE71123 |
MeDIP assay using human myometrium of women with preterm labor of different phenotypes vs. normal term labor |
| GSE71548 |
Aflatoxin B1 induces persistent epigenomic effects in primary human hepatocytes associated with hepatocellular carcinoma [DNA methylation] |
| GSE71549 |
Aflatoxin B1 induces persistent epigenomic effects in primary human hepatocytes associated with hepatocellular carcinoma |
| GSE84189 |
Induction of DNA methylation changes in primary human hepatocytes by valproic acid |
| GSE84250 |
Induction of changes in primary human hepatocytes by valproic acid |
| GSE84276 |
Integrative "-omics" analysis in primary human hepatocytes unravels persistent mechanisms of cyclosporine A-induced cholestasis (MeDIP) |
| GSE84281 |
Integrative "-omics" analysis in primary human hepatocytes unravels persistent mechanisms of cyclosporine A-induced cholestasis |
| GSE157111 |
Genome-wide DNA methylation profiles of Arsenic exposed subjects through drinking water in Pakistan |
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| Data table header descriptions |
| ID |
PROBEID_SEQID |
| PROBE_ID |
|
| SEQ_ID |
|
| CHROMOSOME |
|
| RANGE_GB |
CHROMOSOME ACCESSION.VERSION |
| SPOT_ID |
|
| RANGE_START |
POSITION. The start position (relative to the RANGE_GB accession). |
| LENGTH |
|
| RANGE_END |
The end position (relative to the RANGE_GB accession). |
| SEQUENCE |
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| Data table |
| ID |
PROBE_ID |
SEQ_ID |
CHROMOSOME |
RANGE_GB |
SPOT_ID |
RANGE_START |
LENGTH |
RANGE_END |
SEQUENCE |
| CHR01FS000015738_chr1:15366-44081 |
CHR01FS000015738 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
15738 |
50 |
15787 |
AGGGGAGGAGGCGATCTTGCCCAAGGCCCTCCGACTGCAAGCTCCAGGGC |
| CHR01FS000016058_chr1:15366-44081 |
CHR01FS000016058 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
16058 |
50 |
16107 |
CGAGGAGCCCTGCGCTGGGGAGGCCGGACCTTTGGAGACTGTGTGTGGGG |
| CHR01FS000016770_chr1:15366-44081 |
CHR01FS000016770 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
16770 |
50 |
16819 |
AACACAAAGTGTGGGGTGTCTAGGGAAGAAGGTGTGTGACCAGGGAGGTC |
| CHR01FS000017334_chr1:15366-44081 |
CHR01FS000017334 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
17334 |
50 |
17383 |
CAGCCAGGGGGTCCAGGAAGACATACTTCTTCTACCTACAGAGGCGACAT |
| CHR01FS000017588_chr1:15366-44081 |
CHR01FS000017588 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
17588 |
50 |
17637 |
CCTGCCCTCTGGCCATACAGGTTCTCGGTGGTGTTGAAGAGCAGCAAGGA |
| CHR01FS000017864_chr1:15366-44081 |
CHR01FS000017864 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
17864 |
50 |
17913 |
CAGTATCCAGTCCTCCTGGTGTGTGACAGGCTATATGCGCGGCCAGCAGA |
| CHR01FS000018156_chr1:15366-44081 |
CHR01FS000018156 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
18156 |
50 |
18205 |
AAGAAAGCTCAAGGTACAGGTGGGCAGCAGGGCAGAGACTGGGCAGCCTC |
| CHR01FS000018710_chr1:15366-44081 |
CHR01FS000018710 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
18710 |
50 |
18759 |
ACTTCACAACCCCTCATGATCACGTGCAGCAGACAATGTGGCCTCTGCAG |
| CHR01FS000018838_chr1:15366-44081 |
CHR01FS000018838 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
18838 |
50 |
18887 |
CCCTGCACATACTGAACGGCTCACTGAGCAAACCCCGAGTCCCGACCACC |
| CHR01FS000019822_chr1:15366-44081 |
CHR01FS000019822 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
19822 |
50 |
19871 |
TTCATCTGCTGTAAAGGGTCCTCCAGCACAAGCTGTCTTAATTGACCCTA |
| CHR01FS000020184_chr1:15366-44081 |
CHR01FS000020184 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
20184 |
50 |
20233 |
AGGATTATTAGCCTGCTGTGCCCGGGGAAAACATGCAGCACAGTGCATCT |
| CHR01FS000020366_chr1:15366-44081 |
CHR01FS000020366 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
20366 |
50 |
20415 |
TGGACTGATTCCAGCCTTGCACGGAGGGATCTGGCAGAGTCCATCCAGTT |
| CHR01FS000020764_chr1:15366-44081 |
CHR01FS000020764 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
20764 |
50 |
20813 |
TTCTTTCAATCAGCAGGGACCGTGCACTCTCTTGGAGCCACCACAGAAAA |
| CHR01FS000020848_chr1:15366-44081 |
CHR01FS000020848 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
20848 |
50 |
20897 |
ACCACAGAAAACAGAGGGTGACTGTCATCCCCTCCAGTCTCTGCACACTC |
| CHR01FS000020986_chr1:15366-44081 |
CHR01FS000020986 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
20986 |
50 |
21035 |
CAGTGAGGCCAGAGGCCGGGCTGTGCTGGGGCCTGAGCCGGGTGGTGGGG |
| CHR01FS000021090_chr1:15366-44081 |
CHR01FS000021090 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
21090 |
50 |
21139 |
GGACGGGTTCAAAGCTGGTCACATCCCCACCGAAAAAGCCCATGGACAAC |
| CHR01FS000021314_chr1:15366-44081 |
CHR01FS000021314 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
21314 |
50 |
21363 |
TGCTTGCAAGTCCCCTGTCTGTAGCCTCACCCCTGTCGTATCCTGACTAC |
| CHR01FS000021466_chr1:15366-44081 |
CHR01FS000021466 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
21466 |
50 |
21515 |
CTGCCCTGCTCAAAATCCAATCACAGCTCCCTAACACGCCTGAATCAACT |
| CHR01FS000021836_chr1:15366-44081 |
CHR01FS000021836 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
21836 |
50 |
21885 |
GCCTCCCTCCAAGCCTGCAGCCCCCATTTCCAGACCCTGCCAGGGCAACC |
| CHR01FS000021924_chr1:15366-44081 |
CHR01FS000021924 |
chr1:15366-44081 |
chr1 |
NC_000001.10 |
|
21924 |
50 |
21973 |
AGTCTGCCCTATGTGGAGTAAGCACGTGGTTTTCCTCTTCAGCAACTATT |
Total number of rows: 2081759
Table truncated, full table size 359238 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL16284_100929_HG19_Deluxe_Prom_Meth_HX1.gff.gz |
5.3 Mb |
(ftp)(http) |
GFF |
| GPL16284_100929_HG19_Deluxe_Prom_Meth_HX1.ncd.gz |
279 b |
(ftp)(http) |
NCD |
| GPL16284_100929_HG19_Deluxe_Prom_Meth_HX1.ndf.gz |
140.6 Mb |
(ftp)(http) |
NDF |
| GPL16284_100929_HG19_Deluxe_Prom_Meth_HX1.pos.gz |
17.8 Mb |
(ftp)(http) |
POS |
| GPL16284_100929_HG19_Deluxe_Prom_Meth_HX1_probe_locations.gff.gz |
13.8 Mb |
(ftp)(http) |
GFF |
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