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Platform GPL16027 Query DataSets for GPL16027
Status Public on Sep 07, 2012
Title Agilent-026806 M. mulatta (Rhesus) Oligo Microarray v2 (Probe Name Version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description M. mulatta (Rhesus) Oligo Microarray v2

Arrays of this design have barcodes that begin with 16026806 or 2526806.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Sep 07, 2012
Last update date Jan 18, 2013
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (282) GSM1238783, GSM1238784, GSM1238785, GSM1238786, GSM1522536, GSM1522537 
Series (13)
GSE51103 The Gene Expression Profile of Peripheral Blood Mononuclear Cells from EV71-Infected Rhesus Neonates
GSE62209 Gene Expression Analysis of Host Immune Responses in rhesus macaques infected with SIVmac239 or deglycosylated live-attenuated SIV
GSE66757 The Gene Expression Profile of Peripheral Blood Mononuclear Cells from CA16-Infected Rhesus Neonates
Relations
Alternative to GPL16026

Data table header descriptions
ID
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBank accession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
A_01_P000001 A_01_P000001 FALSE XM_001103444 704781 MEP1A "meprin A, alpha (PABA peptide hydrolase)" Mmu.9720 gb|XM_001103444 chr4:46665254-46665313 "PREDICTED: Macaca mulatta meprin A, alpha (PABA peptide hydrolase) (MEP1A), mRNA [XM_001103444]" AGCAGCACCTCCTCCATGCAGGCCTTATTTTCCCATGGTCAGTGCAGTTTGGGGCAGCTT
A_01_P000002 A_01_P000002 FALSE chr5:080630462-080630521 AGTATGGTGAGTGCCAAAACAGAGTTATGAACACGATATCTATCTGGAAGCACTGAGAAG
A_01_P000003 A_01_P000003 FALSE NM_001168609 NM_001168609 704662 CAPZA2 "capping protein (actin filament) muscle Z-line, alpha 2" Mmu.173 ref|NM_001168609|gb|JU477402|gb|JU336588 chr3:154247892-154247951 "Macaca mulatta capping protein (actin filament) muscle Z-line, alpha 2 (CAPZA2), mRNA [NM_001168609]" GGTTTCATTCAATAGAGTATTGCTTATTATACTTGAGTGGAATCCTTTCCTCACATACTC
A_01_P000004 A_01_P000004 FALSE JU337169 gb|JU337169|gb|JU337170|gb|JU337168|gb|JU350776 chr15:78064016-78064075 TSA: Macaca mulatta Mamu_506086 mRNA sequence. [JU337169] TGCTGCACAAAAGCAGATACTTGAGGAAAACACTATTTCCAAAAGCACGTGTATTGACAA
A_01_P000005 A_01_P000005 FALSE chr19:006272179-006272238 TTGAGGAACTTTTAATTTGCAAGGGTGCCCCCTATGGATGGGGCATTCCAGCTGAGACAC
A_01_P000006 A_01_P000006 FALSE ENSMMUT00000005571 ens|ENSMMUT00000005571 chr10:56888885-56888826 GTCTGCGGTTTTATGACTTGGCATTTTAGAAACTCCTCATTGTCCAGGTTCCTCATGTAG
A_01_P000010 A_01_P000010 FALSE JV051555 707872 CNGA3 cyclic nucleotide gated channel alpha 3 ENSMMUT00000029814 ens|ENSMMUT00000029814|gb|JV051555|gb|JU338699 chr13:98290363-98290422 TSA: Macaca mulatta Mamu_527983 mRNA sequence. [JU338699] AGCAACGTACAGGGAGAGCCTTTTAGATTGAAGGCTGGAGTGGTGTCCTAAACCAAAAAA
A_01_P000011 A_01_P000011 FALSE XM_001094251 XM_001094251 Mmu.4531 gb|JU485823|gb|JV059993|gb|XM_001094016|ref|XM_001094251 chr11:103587190-103587131 TSA: Macaca mulatta Mamu_377566 mRNA sequence. [JU485823] AATTTCCCCTGCTACTTTGAAACCAGAAAATAATGACTGGCCATTCATTATATCTGTCTT
A_01_P000012 A_01_P000012 FALSE XM_001118474 XM_001118474 722313 LOC722313 barH-like 1 homeobox protein-like ENSMMUT00000006487 ens|ENSMMUT00000006487|ref|XM_001118474 chr15:6052815-6052756 "PREDICTED: Macaca mulatta barH-like 1 homeobox protein-like (LOC722313), mRNA [XM_001118474]" CAACCTGAACCCCGGCGCGGCGCTCTACCTGTACCGCGGCCCCAGCGCGCCGCCGCCCGC
A_01_P000013 A_01_P000013 FALSE JV055251 701783 SLC4A1AP "solute carrier family 4 (anion exchanger), member 1, adaptor protein" Mmu.14370 ENSMMUT00000027755 ens|ENSMMUT00000027755|ens|ENSMMUT00000043658|gb|JV055251|gb|JU482814 chr13:27675776-27675835 TSA: Macaca mulatta Mamu_362137 mRNA sequence. [JU482814] TGGTGACTGGCCTTTCCTTCTGTGTTCTTGGCTTCCTAAATTTATCTGCCCATATGATTC
A_01_P000017 A_01_P000017 FALSE JV056871 705802 ZDHHC20 "zinc finger, DHHC-type containing 20" Mmu.18098 ENSMMUT00000010310 ens|ENSMMUT00000010310|gb|JV056871|gb|JU333793|gb|JU475028 chr17:2005334-2005275 TSA: Macaca mulatta Mamu_523113 mRNA sequence. [JU333793] TAAAAAAGAAGCTTTGTACAGTCCTGGGATCCACAGACGCACTGCTCCAGAGCGGAACGA
A_01_P000018 A_01_P000018 FALSE JU471134 714092 ATG16L1 ATG16 autophagy related 16-like 1 (S. cerevisiae) ENSMMUT00000032865 ens|ENSMMUT00000032865|ens|ENSMMUT00000032859|ens|ENSMMUT00000032861|ens|ENSMMUT00000032863 chr12:97182605-97182664 TCACGGGCCAGGGCACATCTTTTATTTATTTCGTTATGTTGCCCAACAGAACTTGATTGT
A_01_P000020 A_01_P000020 FALSE JU475178 718197 LOC718197 ly6/PLAUR domain-containing protein 3-like Mmu.1278 ENSMMUT00000045066 ens|ENSMMUT00000045066|ens|ENSMMUT00000024980|gb|JU475178|gb|XM_001102229 unmapped TSA: Macaca mulatta Mamu_378789 mRNA sequence. [JU475178] ACCGTGCCTTATGCCTGTGTGTGATCAGTTTCTGGCACACAGATGCCTCAATAAAGATTT
A_01_P000023 A_01_P000023 FALSE NM_001194236 NM_001194236 712971 MED31 mediator complex subunit 31 Mmu.18453 ENSMMUT00000005363 ref|NM_001194236|ens|ENSMMUT00000005363|gb|JU475797 chr16:6360597-6360538 "Macaca mulatta mediator complex subunit 31 (MED31), mRNA [NM_001194236]" GGCAGGACAACTAGTGGTTAATTACTAATTGGACTCTTGACTTTAGAACAAACATGAGGA
A_01_P000024 A_01_P000024 FALSE JV043934 706690 GPBP1L1 GC-rich promoter binding protein 1-like 1 Mmu.12403 ENSMMUT00000002774 ens|ENSMMUT00000002774|gb|JV043934|gb|JU471282|gb|JU471284 chr1:48534918-48534859 TSA: Macaca mulatta Mamu_367343 mRNA sequence. [JU471282] GGGGGGAAATGTGAATTCAGACACAACTGTTCTCTTTTTAGCAGATACTTTTTTGATGCA
A_01_P000028 A_01_P000028 FALSE chr20:056757809-056757868 ATGATGGACTTTGTACATGAATATGTTCTGTACAAGTACTCTTTCTGTCACTAGTACTAC
A_01_P000029 A_01_P000029 FALSE JV058150 gb|JV058150 chr10:13504048-13503989 GTCCACCTTATGTTGCACACATATAACATTGTGTAAATTGCATACTATGGTTTGACTTGC
A_01_P000030 A_01_P000030 FALSE JU484147 gb|JU484147|gb|JV057427|gb|JV057428|gb|JU341554 chr2:69798842-69798901 TSA: Macaca mulatta Mamu_370273 mRNA sequence. [JU484147] TGGAAAAGACTTAGACCTTGACCTGGGTTCTGGGTATATTTGCACTTTTGAGACTGGTAG
A_01_P000031 A_01_P000031 FALSE 696683 ORC5 "origin recognition complex, subunit 5" ENSMMUT00000016896 ens|ENSMMUT00000016896 chr3:141548760-141548701 ATTATATCATGAAAATCAAGCAGTTTCTATTGCTTTAAATGCTTTTATTAAAGCAATCTA
A_01_P000036 A_01_P000036 FALSE JU473811 693763 APOOL apolipoprotein O-like ENSMMUT00000047910 ens|ENSMMUT00000047910|ens|ENSMMUT00000047909|gb|JU473811|gb|JV044058 chrX:83892488-83892547 TSA: Macaca mulatta Mamu_399429 mRNA sequence. [JU473811] AAGCTGAAGTAGACTGCATACAGAGACTACATAGAAAACTACAAGATGTGTGACGTTGCA

Total number of rows: 43663

Table truncated, full table size 11438 Kbytes.




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Supplementary file Size Download File type/resource
GPL16027_026806_D_GEO_20120509.txt.gz 3.8 Mb (ftp)(http) TXT

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