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Platform GPL160 Query DataSets for GPL160
Status Public on Oct 01, 2002
Title Atlas Select Human Tumor Array (Cat. #7830-1)
Technology type spotted DNA/cDNA
Distribution commercial
Organism Homo sapiens
Manufacturer BD Biosciences Clontech
Manufacture protocol see manufacturer's web site
 
Description Designed for studying tumor suppressor genes, markers for a specific tumor type, or the processes of tumorigenesis in a system of interest. The array contains genes differentially expressed in liver, lung, prostate, breast, and bladder tumors.
 
Web link http://www.clontech.com/atlas/index.shtml
Submission date Apr 24, 2002
Last update date May 31, 2005
Organization BD Biosciences Clontech
E-mail(s) tech@clontech.com
Phone 877-232-8995
URL http://www.clontech.com
Street address 1020 East Meadow Circle
City Palo Alto
State/province CA
ZIP/Postal code 94303-4230
Country USA
 

Data table header descriptions
ID unique reference number used by BD Biosciences Clontech to identify each gene in collection
GENE_NAME set of names commonly used for the gene, based on the current literature
COORDINATE array coordinate
GB_LIST GenBank accession number
SP_LIST SwissProt accession number
REG_IN_CANCER regulation in cancer
%HOMOLOGY percentage homology
HOMOLOGY homology
TISSUE_CLASSIFICATION tissue classification

Data table
ID GENE_NAME COORDINATE GB_LIST SP_LIST REG_IN_CANCER %HOMOLOGY HOMOLOGY TISSUE_CLASSIFICATION
4 c-myc proto-oncogene F3d V00568 P01106, P01107 up-regulated in MCF7-ErbB2 known Additional Cancer Genes (non-differentially expressed)
14 p53-binding mouse double minute 2 homolog (MDM2) F1b Z12020, M92424 Q00987, Q13226 Additional Cancer Genes (non-differentially expressed)
15 platelet-derived growth factor B subunit precursor (PDGFB; PDGF2); bacaplermin; c-sis F2a X02811, X02744, M12783, M16288 P01127, P78431 Additional Cancer Genes (non-differentially expressed)
16 liver glyceraldehyde 3-phosphate dehydrogenase (GAPDH; G3PDH) G12 X01677 P04406 known
38 p53 cellular tumor antigen F1d M14694, M14695 P04637 Additional Cancer Genes (non-differentially expressed)
49 cytoplasmic beta-actin (ACTB) G19 X00351 P02570, Q11211, P99021, Q64316, P70514 known
153 c-jun proto-oncogene; avian sarcoma virus 17 oncogene homolog; transcription factor AP-1 F1j J04111 P05412 Additional Cancer Genes (non-differentially expressed)
161 erbB2 proto-oncogene; neu proto-oncogene; HER2 F1m M95667, M11730 P04626, Q14256 up-regulated in MCF7-ErbB2 known Additional Cancer Genes (non-differentially expressed)
196 platelet-derived growth factor receptor alpha precursor (PDGFR-alpha; PDGFRA); CD140A antigen F2n M21574 P16234 up-regulated in IMR90 known Additional Cancer Genes (non-differentially expressed)
254 vascular endothelial growth factor receptor 1 (VEGFR1); fms-related tyrosine kinase 1 (FLT1); soluble VEGFR; soluble FLT (SFLT) F1n X51602, U01134 P17948, P16057, Q12954 Additional Cancer Genes (non-differentially expressed)
330 transforming growth factor beta 3 (TGF-beta3; TGFB3) F1g J03241 P10600 Additional Cancer Genes (non-differentially expressed)
359 nucleoside diphosphate kinase B (NDP kinase B; NDKB); expressed in non-metastatic cells 2 protein (NME2); myc purine-binding transcription factor (PUF); NM23B F1h L16785, M36981 P22392 up-regulated in MCF7-ErbB2 known Additional Cancer Genes (non-differentially expressed)
386 mas proto-oncogene F2b M13150 P04201 Additional Cancer Genes (non-differentially expressed)
455 colorectal mutant cancer protein (MCC) F1f M62397 P23508 Additional Cancer Genes (non-differentially expressed)
458 early growth response protein 1 (EGR1); transcription factor ETR103; KROX24; zinc finger protein 225 (ZNF225); AT225 F3c X52541, M62829 P18146 up-regulated in MCF7-ErbB2 known Additional Cancer Genes (non-differentially expressed)
541 cyclin-dependent kinase inhibitor 1A (CDKN1A); melanoma differentiation-associated protein 6 (MDA6); CDK-interacting protein 1 (CIP1); WAF1; SDI1 F3b U09579, L25610 P38936 up-regulated in MCF7 known Additional Cancer Genes (non-differentially expressed)
573 Wilms' tumor protein (WT33; WT1) F1e X51630 P19544 Additional Cancer Genes (non-differentially expressed)
632 cyclin-dependent protein kinase 2 (CDK2); p33 protein kinase F2h M68520 P24941 Additional Cancer Genes (non-differentially expressed)
633 cell division cycle 25 homolog A (CDC25A); M-phase inducer phosphatase 1 (MPI1) F3a M81933 P30304 Additional Cancer Genes (non-differentially expressed)
636 G2/mitotic-specific cyclin A (CCNA; CCN1) F2f X51688 P20248 Additional Cancer Genes (non-differentially expressed)

Total number of rows: 478

Table truncated, full table size 46 Kbytes.




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