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Status
Public on Apr 12, 2012
Title
NimbleGen Human CGH 3x720K Whole-Genome Tiling v3.0 Array [090527_HG18_WG_CGH_v3.1_HX3]
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Roche NimbleGen
Manufacture protocol
see manufacturer's web site www.nimblegen.com
Description
Build: Hg18, NCBI 36
Submission date
Apr 12, 2012
Last update date
Jan 03, 2013
Organization
NimbleGen Systems, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov Phone
608-218-7600
URL
http://www.nimblegen.com/ Street address
504 S. Rosa Road
City
Madison
State/province
WI
ZIP/Postal code
53719
Country
USA
Samples (141)
GSM931321 , GSM931322 , GSM931323 , GSM931324 , GSM931325 , GSM931326
GSM931327 ,
GSM931328 ,
GSM931329 ,
GSM931330 ,
GSM931331 ,
GSM931332 ,
GSM931333 ,
GSM931334 ,
GSM931335 ,
GSM931336 ,
GSM931337 ,
GSM931338 ,
GSM931339 ,
GSM931340 ,
GSM931341 ,
GSM931342 ,
GSM931343 ,
GSM931344 ,
GSM931345 ,
GSM931346 ,
GSM931347 ,
GSM931348 ,
GSM931349 ,
GSM931350 ,
GSM931351 ,
GSM931352 ,
GSM931353 ,
GSM931354 ,
GSM931355 ,
GSM931356 ,
GSM931357 ,
GSM931358 ,
GSM931359 ,
GSM931360 ,
GSM951496 ,
GSM951497 ,
GSM951498 ,
GSM951499 ,
GSM951500 ,
GSM951501 ,
GSM951502 ,
GSM951503 ,
GSM951504 ,
GSM951535 ,
GSM951536 ,
GSM951537 ,
GSM1059798 ,
GSM1059799 ,
GSM1059800 ,
GSM1059801 ,
GSM1059802 ,
GSM1059803 ,
GSM1059804 ,
GSM1059805 ,
GSM1059806 ,
GSM1059807 ,
GSM1059808 ,
GSM1059809 ,
GSM1059810 ,
GSM1105702 ,
GSM1105703 ,
GSM1327635 ,
GSM1327636 ,
GSM1327637 ,
GSM1327638 ,
GSM1327639 ,
GSM1327640 ,
GSM1327641 ,
GSM1327642 ,
GSM1327643 ,
GSM1327644 ,
GSM1327645 ,
GSM1327646 ,
GSM1327647 ,
GSM1327648 ,
GSM1327649 ,
GSM1327650 ,
GSM1327651 ,
GSM1327652 ,
GSM1327653 ,
GSM1327654 ,
GSM1327655 ,
GSM1327656 ,
GSM1327657 ,
GSM1327658 ,
GSM1327659 ,
GSM1327660 ,
GSM1327661 ,
GSM1327662 ,
GSM1327663 ,
GSM1327664 ,
GSM1327665 ,
GSM1327666 ,
GSM1327667 ,
GSM1327668 ,
GSM1327669 ,
GSM1327670 ,
GSM1327671 ,
GSM1327672 ,
GSM1327673 ,
GSM1327674 ,
GSM1327675 ,
GSM1327676 ,
GSM1327677 ,
GSM1327678 ,
GSM1327679 ,
GSM1327680 ,
GSM1327681 ,
GSM1327682 ,
GSM1327683 ,
GSM1327684 ,
GSM1327685 ,
GSM1327686 ,
GSM1327687 ,
GSM1553989 ,
GSM1553990 ,
GSM1553991 ,
GSM1553992 ,
GSM1553993 ,
GSM1553994 ,
GSM1553995 ,
GSM1553996 ,
GSM1553997 ,
GSM1553998 ,
GSM1553999 ,
GSM1554000 ,
GSM1554001 ,
GSM1554002 ,
GSM1554003 ,
GSM1554004 ,
GSM1554005 ,
GSM1554006 ,
GSM1554007 ,
GSM1554008 ,
GSM1554009 Series (8)
GSE37987 Abnormal Developmental Control of Replication Timing Domains in Pediatric Acute Lymphoblastic Leukemia
GSE38888 Lack of genetic heterogeneity at high-resolution aCGH between primary breast cancers and their paired lymph node metastases
GSE43272 MCL1 is deregulated in subgroups of diffuse large B-cell lymphoma
GSE45495 PTEN loss defines a PI3K/AKT pathway-dependent germinal center subtype of diffuse large B-cell lymphoma
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
GSE54994 a-CGH of Esophageal Cancer (53 cases)
GSE54995 Esophageal Cancer Project
GSE63623 Concurrent DNA copy number alterations and mutations in genes related to maintenance of genome stability in uninvolved glandular tissue from breast cancer patients
Data table header descriptions ID PROBE_ID from .pos file
CHROMOSOME RANGE_GB CHROMOSOME Accession.version
RANGE_START the start position relative to the RANGE_GB accession
RANGE_END the end position relative to the RANGE_GB accession
SEQUENCE
Data table ID CHROMOSOME RANGE_GB RANGE_START RANGE_END SEQUENCE CHR01FS000032108
chr1
NC_000001.9 32108
32167
ACTTTATTCAAGAGCCTATTGTGCAAGCATAAGTGGCTGAGTCAGGTTCTCAACTCTGCT
CHR01FS000036566
chr1
NC_000001.9 36566
36625
GCAATCATGTAGACATCCTGATTCCAGACAATGTGTCTGGAGGCAGGGTTTACAGGACTT
CHR01FS000037196
chr1
NC_000001.9 37196
37255
TGAATGGGAAGAAATCAAGAATAGTTATACGAATATCACCATTGCATTAAAGCTCTCTTC
CHR01FS000038109
chr1
NC_000001.9 38109
38168
CATTCCCTCTGTATGCCATATTTGATAAAGCATTTGATAATCTTAGTCAATGCCTGGGCC
CHR01FS000039532
chr1
NC_000001.9 39532
39591
TGAAGTCAGGAGACACACATTCTATCTGATTTTCTACATTATCTGTTTGAAAAGGTTACC
CHR01FS000049283
chr1
NC_000001.9 49283
49342
TCCATGTTTGCAGTGACAATATACATAAACAGTGTATGAAAACTCAAGTAAAATCTACTC
CHR01FS000052308
chr1
NC_000001.9 52308
52367
TAGGCACATGTAGGAAACAGCTTTCAGAGATGCCTTAACCGTAATTATGCATTTGTATTC
CHR01FS000055650
chr1
NC_000001.9 55650
55709
AGTATTATGCTGGCAACAATTGTCGAGTCCTCCTCCTCACTCTTCTGGGCTAATTTGTTC
CHR01FS000059489
chr1
NC_000001.9 59489
59548
AACTTGCCTGTACAGATACCTACAGGCTAGATATTATGGTCATTGCTAACAGTGGTGTGC
CHR01FS000060884
chr1
NC_000001.9 60884
60943
ATGACACATCCCAATCTTAACAGATGCTCATTTGGGATACTGTACTTGTGAGTGGAAGTG
CHR01FS000072260
chr1
NC_000001.9 72260
72319
TTCGAATACTCAAAAGTGCTTACATACAATGAAAAATTTGGAAATCCATAAGCATGGCCA
CHR01FS000241735
chr1
NC_000001.9 241735
241794
AAGCTTATGAAACAGTAGATGTGTGTATCTAGTACATAAGAGCTGAATGTCAATATATAT
CHR01FS000357503
chr1
NC_000001.9 357503
357562
AGCCCAGTTGGCTGGACCAATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTT
CHR01FS000389471
chr1
NC_000001.9 389471
389530
AGTCAGCTGAATAGAGATGTTTTGCTTAGTCTATGTAAAAGTATATTAATTTTATTGATA
CHR01FS000403676
chr1
NC_000001.9 403676
403735
GCAAGGACATGCAATGTGACTTCACTACTCCTTTCATCAAGAAAAGGAGCCTCTTGGTCG
CHR01FS000443361
chr1
NC_000001.9 443361
443420
ACACGTATATCGCTACGGTTACTAATTGTGTGCACCTAGCCCTGTAGCTGTGGTCATCTG
CHR01FS000530358
chr1
NC_000001.9 530358
530417
GCAAATTACAGCCACTAGGAAACGCTTTTCATTCATTCCGGGATGGCTGAAATGTAAGCA
CHR01FS000532718
chr1
NC_000001.9 532718
532777
TTCCTCCTCTTGAGTCTCATCTCGGAAAGAGGGAGCTGTCAGTCAGAGCTCAGGCCAAAC
CHR01FS000547649
chr1
NC_000001.9 547649
547708
CACTTCAGAGCTATGGGAACCAATGGAATTGGATCTAAGGTTTTGAGTTGGCTCTTGTGC
CHR01FS000553694
chr1
NC_000001.9 553694
553753
TGTGCCTACGGACATAATCTTTGAATTTGCTTTGTTTCTCGATGAATAACTTGGAAGCTA
719690 80322 Kbytes .Supplementary file Size Download File type/resource GPL15436_090527_HG18_WG_CGH_v3.1_HX3.gff.gz
3.0 Mb
(ftp) (http) GFF
GPL15436_090527_HG18_WG_CGH_v3.1_HX3.ncd.gz
265 b
(ftp) (http) NCD
GPL15436_090527_HG18_WG_CGH_v3.1_HX3.ndf.gz
39.8 Mb
(ftp) (http) NDF
GPL15436_090527_HG18_WG_CGH_v3.1_HX3.pos.gz
5.4 Mb
(ftp) (http) POS
GPL15436_090527_HG18_WG_CGH_v3.1_HX3_probe_locations.gff.gz
5.6 Mb
(ftp) (http) GFF
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