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Status
Public on Jul 11, 2012
Title
Affymetrix GeneChip Human Genome U133 Plus 2.0 Array based on a custom CDF (REFSEQ_14)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Affymetrix
Manufacture protocol
see the Affymetrix website
Description
This identical to GPL570 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below. We used the REFSEQ14 version for HGU-133_plus2
Web link
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download_v7.asp Submission date
Apr 02, 2012
Last update date
Jul 11, 2012
Contact name
GEO admin
E-mail(s)
geo@ncbi.nlm.nih.gov Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (42)
GSM908012 , GSM908013 , GSM908014 , GSM908015 , GSM908016 , GSM908017
GSM908018 ,
GSM908019 ,
GSM908020 ,
GSM908021 ,
GSM908022 ,
GSM908023 ,
GSM908024 ,
GSM908025 ,
GSM908026 ,
GSM908027 ,
GSM908028 ,
GSM908029 ,
GSM908030 ,
GSM908031 ,
GSM908032 ,
GSM908033 ,
GSM908090 ,
GSM908091 ,
GSM908092 ,
GSM908093 ,
GSM908094 ,
GSM908095 ,
GSM908096 ,
GSM908097 ,
GSM908098 ,
GSM908099 ,
GSM908100 ,
GSM908101 ,
GSM908102 ,
GSM908103 ,
GSM908104 ,
GSM908105 ,
GSM908106 ,
GSM908107 ,
GSM908108 ,
GSM908109 Series (3)
GSE36984 Expression Profiling of Primary Human Fetal and Adult Hematopoietic Stem/Progenitor Cells (HSPCs) and Differentiating Proerythroblasts (ProEs)
GSE36988 Expression Profiling of Primary Human Proerythroblasts (ProEs) After IRF2, IRF6, and MYB shRNA Knockdown
GSE36994 Comparative profiling of human fetal and adult erythropoiesis
Relations Alternative to
GPL570
Data table header descriptions ID GB_ACC GenBank Accession number
Description
Data table ID GB_ACC Description NM_000014_at
NM_000014 Homo sapiens alpha-2-macroglobulin (A2M), mRNA
NM_000015_at
NM_000015 Homo sapiens N-acetyltransferase 2 (arylamine N-acetyltransferase) (NAT2), mRNA
NM_000016_at
NM_000016 Homo sapiens acyl-CoA dehydrogenase, C-4 to C-12 straight chain (ACADM), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA
NM_000017_at
NM_000017 Homo sapiens acyl-CoA dehydrogenase, C-2 to C-3 short chain (ACADS), nuclear gene encoding mitochondrial protein, mRNA
NM_000018_at
NM_000018 Homo sapiens acyl-CoA dehydrogenase, very long chain (ACADVL), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA
NM_000019_at
NM_000019 Homo sapiens acetyl-CoA acetyltransferase 1 (ACAT1), nuclear gene encoding mitochondrial protein, mRNA
NM_000020_at
NM_000020 Homo sapiens activin A receptor type II-like 1 (ACVRL1), transcript variant 1, mRNA
NM_000021_at
NM_000021 Homo sapiens presenilin 1 (PSEN1), transcript variant 1, mRNA
NM_000022_at
NM_000022 Homo sapiens adenosine deaminase (ADA), mRNA
NM_000023_at
NM_000023 Homo sapiens sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) (SGCA), transcript variant 1, mRNA
NM_000024_at
NM_000024 Homo sapiens adrenergic, beta-2-, receptor, surface (ADRB2), mRNA
NM_000025_at
NM_000025 Homo sapiens adrenergic, beta-3-, receptor (ADRB3), mRNA
NM_000026_at
NM_000026 Homo sapiens adenylosuccinate lyase (ADSL), transcript variant 1, mRNA
NM_000027_at
NM_000027 Homo sapiens aspartylglucosaminidase (AGA), transcript variant 1, mRNA
NM_000028_at
NM_000028 Homo sapiens amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase (AGL), transcript variant 4, mRNA
NM_000029_at
NM_000029 Homo sapiens angiotensinogen (serpin peptidase inhibitor, clade A, member 8) (AGT), mRNA
NM_000030_at
NM_000030 Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA
NM_000031_at
NM_000031 Homo sapiens aminolevulinate dehydratase (ALAD), mRNA
NM_000032_at
NM_000032 Homo sapiens aminolevulinate, delta-, synthase 2 (ALAS2), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA
NM_000033_at
NM_000033 Homo sapiens ATP-binding cassette, sub-family D (ALD), member 1 (ABCD1), mRNA
35200 3649 Kbytes .Supplementary file Size Download File type/resource GPL15394_HGU133Plus2_Hs_REFSEQ.cdf.gz
14.1 Mb
(ftp) (http) CDF
GPL15394_HGU133Plus2_Hs_REFSEQ_desc.txt.gz
608.8 Kb
(ftp) (http) TXT
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