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Platform GPL15352 Query DataSets for GPL15352
Status Public on Jul 06, 2012
Title NimbleGen Drosophila melanogaster 12X135K Gene Expression Array [100718_Dmel_exp]
Technology type in situ oligonucleotide
Distribution commercial
Organism Drosophila melanogaster
Manufacturer NimbleGen
Manufacture protocol Drosophila melanogaster 12X135K Array. (http://www.nimblegen.com/products/expression/eukarya/dmelanogaster/12x135k/index.html).
 
Description Drosophila melanogaster DM5.7 build and having 60 basepair probes with target genes 16637 with 8 probes per gene ( one pair for replicates ) per each array

DesignID: 535513

native array description file:100718_Dmel_exp.ngd
native array description file:100718_Dmel_exp.ndf
native array description file:100718_Dmel_exp_HX12.ncd
 
Submission date Mar 14, 2012
Last update date May 13, 2016
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (60) GSM900010, GSM900011, GSM900012, GSM900013, GSM900014, GSM900015 
Series (7)
GSE36736 Genome wide transcriptional profiling of BEAF-32 in wing imaginal tissues of wildtype and mutants [expresion array]
GSE36737 BEAF-32 insulator regulates gene expression of genes involved in cell polarity and neoplastic growth.
GSE100142 Gene expression profiling of Drosophila melangoaster Myb mutant wing discs of 3rd instar larvae. [NimbleGenGeneExpression-12plex]

Data table header descriptions
ID
CLONE_ID Flybase geneID number
SEQUENCE
BUILD
FEAT_TYPE
CHROMOSOME Chromosome where gene is located
START Start position of transcript
STOP End position of transcript
STRAND
GENE_SYMBOL
EXEMPLAR_FOR
FlyBase
FlyBase_Annotation_IDs
GB_protein GenBank Accession number
PT_ACC REFSEQ

Data table
ID CLONE_ID SEQUENCE BUILD FEAT_TYPE CHROMOSOME START STOP STRAND GENE_SYMBOL EXEMPLAR_FOR FlyBase FlyBase_Annotation_IDs GB_protein PT_ACC
FBtr0071764 FBgn0000008 Dmel_r5.7 CDS 2R 18050425 18060032 + a-RB n/a FBpp0071678 CG6741-PB AAF46809 NP_524641
FBtr0100521 FBgn0000008 Dmel_r5.7 CDS 2R 18050425 18060032 + a-RC n/a FBpp0099961 CG6741-PC AAX52678 NP_001014543
FBtr0071763 FBgn0000008 TTTTGTAAAGACCGTGTTTCCCTCAGGCCAGGCAGCCGATGATGGCACACTGCAAGCGGG Dmel_r5.7 CDS 2R 18050425 18060032 + a-RA FBtr0071763;FBtr0071764;FBtr0100521 FBpp0071677 CG6741-PA AAF46810 NP_726168
FBtr0080203 FBgn0000011 GGCCAGCAGGCCAATCCGAAACACGAACTGGGACAGAGCGCGGGTGAAGATTCGAACAGC Dmel_r5.7 CDS 2L 11235597 11259410 + ab-RB FBtr0080203;FBtr0080204 FBpp0079792 CG4807-PB AAN10774 NP_476563
FBtr0080204 FBgn0000011 Dmel_r5.7 CDS 2L 11235597 11259410 + ab-RA n/a FBpp0079793 CG4807-PA AAF53087 NP_476562
FBtr0083388 FBgn0000014 CCGTCAGCGGGCAATTCTCAAGCGGGCGACAGCAGCTGCTCCCCATCGCCCTCGGCATCC Dmel_r5.7 CDS 3R 12635409 12653725 - abd-A-RB FBtr0083388 FBpp0082829 CG10325-PB AAF55360 NP_732176
FBtr0083387 FBgn0000014 GGAGCCGGTATCGCCGATCTGCCCAGGTATCCCTGGATGACGCTTACAGACTGGATGGGA Dmel_r5.7 CDS 3R 12635409 12652945 - abd-A-RA FBtr0083387 FBpp0082828 CG10325-PA AAF55359 NP_476693
FBtr0083381 FBgn0000015 CACCACAGCGGCCACCACCTGAACCTTAGCCTGAACATGGGTCACCATGCCGCCAAGATG Dmel_r5.7 CDS 3R 12755111 12757327 - Abd-B-RC FBtr0083381;FBtr0083382;FBtr0083383;FBtr0083385 FBpp0082823 CG11648-PC AAF55364 NP_732180
FBtr0083382 FBgn0000015 Dmel_r5.7 CDS 3R 12755111 12757327 - Abd-B-RA n/a FBpp0082824 CG11648-PA AAF55363 NP_650577
FBtr0083383 FBgn0000015 Dmel_r5.7 CDS 3R 12755111 12757327 - Abd-B-RD n/a FBpp0082825 CG11648-PD AAN13723 NP_732181
FBtr0083384 FBgn0000015 ACAGCAGTCAACTCCCACCACACATTCCACGCCCACGCATGCGGTTATGTACGAGGATCC Dmel_r5.7 CDS 3R 12755111 12758753 - Abd-B-RB FBtr0083384 FBpp0082826 CG11648-PB AAF55362 NP_524896
FBtr0083385 FBgn0000015 Dmel_r5.7 CDS 3R 12755111 12757327 - Abd-B-RE n/a FBpp0089276 CG11648-PE AAS65159 NP_996220
FBtr0075357 FBgn0000017 GCAGCAAAAGCTGACCAACGGCAATAGTACTGGGTCCGGATTCAAGGCTCAGCTGAAGAA Dmel_r5.7 CDS 3L 16615874 16640243 - Abl-RA FBtr0075357;FBtr0112790 FBpp0075116 CG4032-PA AAF49431 NP_524843
FBtr0112790 FBgn0000017 Dmel_r5.7 CDS 3L 16615874 16640243 - Abl-RB n/a FBpp0111702 CG4032-PB ABW08554 NP_001097623
FBtr0080168 FBgn0000018 TTGCGGATTCCAATGAATCGGTCTCCGTCGATCGACATACGGCCTTGCGCTTCAACCCCA Dmel_r5.7 CDS 2L 10973536 10975212 - abo-RA FBtr0080168 FBpp0079757 CG6093-PA AAF53040 NP_524784
FBtr0070072 FBgn0000022 GCAGCACAAGTTCCTGCAACAGCATTAGCTCTTATTGCAAGCCAGCAACATCGACGATTC Dmel_r5.7 CDS X 264127 264732 + ac-RA FBtr0070072 FBpp0070071 CG3796-PA AAF45498 NP_476824
FBtr0082780 FBgn0000024 TCGTTCTGGAATGATTACTTGCCAAAAGTCAGGAGTTGGGCAGGTACTTGCGATGGCGAT Dmel_r5.7 CDS 3R 9055380 9071854 - Ace-RA FBtr0082780 FBpp0082248 CG17907-PA AAF54915 NP_476953
FBtr0074015 FBgn0000028 CACACACCAACACCTGCACGGTTCCTATCACAGCATGAATCACATGATGAGCCACCACCA Dmel_r5.7 CDS X 15247139 15272347 - acj6-RA FBtr0074015;FBtr0100328 FBpp0073832 CG9151-PA AAF48447 NP_524876
FBtr0100326 FBgn0000028 TGTTTTCCAGGACGCTACAGTCCCTCCTATCGAAGTTCGGAGCAAATGCGTCGCTGCATG Dmel_r5.7 CDS X 15247139 15272347 - acj6-RC FBtr0100326 FBpp0099732 CG9151-PC AAX52497 NP_001014744
FBtr0100328 FBgn0000028 Dmel_r5.7 CDS X 15247139 15272347 - acj6-RD n/a FBpp0099734 CG9151-PD AAX52498 NP_001014743

Total number of rows: 21051

Table truncated, full table size 3538 Kbytes.




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Supplementary file Size Download File type/resource
GPL15352_100718_Dmel_exp.ndf.gz 7.9 Mb (ftp)(http) NDF
GPL15352_100718_Dmel_exp.ngd.gz 763.8 Kb (ftp)(http) NGD
GPL15352_100718_Dmel_exp_HX12.ncd.gz 305 b (ftp)(http) NCD

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