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Status
Public on Jul 06, 2012
Title
NimbleGen Drosophila melanogaster 12X135K Gene Expression Array [100718_Dmel_exp]
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Drosophila melanogaster
Manufacturer
NimbleGen
Manufacture protocol
Drosophila melanogaster 12X135K Array. (http://www.nimblegen.com/products/expression/eukarya/dmelanogaster/12x135k/index.html ).
Description
Drosophila melanogaster DM5.7 build and having 60 basepair probes with target genes 16637 with 8 probes per gene ( one pair for replicates ) per each array DesignID: 535513 native array description file:100718_Dmel_exp.ngd native array description file:100718_Dmel_exp.ndf native array description file:100718_Dmel_exp_HX12.ncd
Submission date
Mar 14, 2012
Last update date
May 13, 2016
Organization
NimbleGen Systems, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov
Phone
608-218-7600
URL
http://www.nimblegen.com/
Street address
504 S. Rosa Road
City
Madison
State/province
WI
ZIP/Postal code
53719
Country
USA
Samples (60)
GSM900010 , GSM900011 , GSM900012 , GSM900013 , GSM900014 , GSM900015
GSM900016 ,
GSM900017 ,
GSM2671891 ,
GSM2671892 ,
GSM2671893 ,
GSM2671894 ,
GSM2671895 ,
GSM2671896 ,
GSM2671897 ,
GSM2671898 ,
GSM2671899 ,
GSM2671900 ,
GSM2671901 ,
GSM2671902 ,
GSM2671903 ,
GSM2671904 ,
GSM2671905 ,
GSM2671906 ,
GSM2671907 ,
GSM2671908 ,
GSM2671909 ,
GSM2671910 ,
GSM2671911 ,
GSM2671912 ,
GSM2671913 ,
GSM2803047 ,
GSM2803048 ,
GSM2803049 ,
GSM2803050 ,
GSM2803051 ,
GSM4677237 ,
GSM4677238 ,
GSM4677239 ,
GSM4677240 ,
GSM4677241 ,
GSM4677242 ,
GSM4677243 ,
GSM4677244 ,
GSM4677245 ,
GSM4677246 ,
GSM4677247 ,
GSM4677248 ,
GSM4677249 ,
GSM4677250 ,
GSM4677251 ,
GSM4677252 ,
GSM4706270 ,
GSM4706271 ,
GSM4706272 ,
GSM4706273 ,
GSM4706274 ,
GSM4706275 ,
GSM4706276 ,
GSM4706277
Series (7)
GSE36736
Genome wide transcriptional profiling of BEAF-32 in wing imaginal tissues of wildtype and mutants [expresion array]
GSE36737
BEAF-32 insulator regulates gene expression of genes involved in cell polarity and neoplastic growth.
GSE100142
Gene expression profiling of Drosophila melangoaster Myb mutant wing discs of 3rd instar larvae. [NimbleGenGeneExpression-12plex]
GSE100143
Drosophila melangoaster Myb mutant wing discs of 3rd instar larvae.
GSE104544
Gene expression analysis of Drosophila WT and dDP-/- mutant larvae.
GSE154686
Gene expression profiling of adult Drosophila melanogaster prickle-spiny legs mutant brains
GSE155565
Gene expression profiling of adult Drosophila melanogaster prickle-prickle mutant brains
Data table header descriptions
ID
CLONE_ID
Flybase geneID number
SEQUENCE
BUILD
FEAT_TYPE
CHROMOSOME
Chromosome where gene is located
START
Start position of transcript
STOP
End position of transcript
STRAND
GENE_SYMBOL
EXEMPLAR_FOR
FlyBase
FlyBase_Annotation_IDs
GB_protein
GenBank Accession number
PT_ACC
REFSEQ
Data table
ID
CLONE_ID
SEQUENCE
BUILD
FEAT_TYPE
CHROMOSOME
START
STOP
STRAND
GENE_SYMBOL
EXEMPLAR_FOR
FlyBase
FlyBase_Annotation_IDs
GB_protein
PT_ACC
FBtr0071764
FBgn0000008
Dmel_r5.7
CDS
2R
18050425
18060032
+
a-RB
n/a
FBpp0071678
CG6741-PB
AAF46809
NP_524641
FBtr0100521
FBgn0000008
Dmel_r5.7
CDS
2R
18050425
18060032
+
a-RC
n/a
FBpp0099961
CG6741-PC
AAX52678
NP_001014543
FBtr0071763
FBgn0000008
TTTTGTAAAGACCGTGTTTCCCTCAGGCCAGGCAGCCGATGATGGCACACTGCAAGCGGG
Dmel_r5.7
CDS
2R
18050425
18060032
+
a-RA
FBtr0071763;FBtr0071764;FBtr0100521
FBpp0071677
CG6741-PA
AAF46810
NP_726168
FBtr0080203
FBgn0000011
GGCCAGCAGGCCAATCCGAAACACGAACTGGGACAGAGCGCGGGTGAAGATTCGAACAGC
Dmel_r5.7
CDS
2L
11235597
11259410
+
ab-RB
FBtr0080203;FBtr0080204
FBpp0079792
CG4807-PB
AAN10774
NP_476563
FBtr0080204
FBgn0000011
Dmel_r5.7
CDS
2L
11235597
11259410
+
ab-RA
n/a
FBpp0079793
CG4807-PA
AAF53087
NP_476562
FBtr0083388
FBgn0000014
CCGTCAGCGGGCAATTCTCAAGCGGGCGACAGCAGCTGCTCCCCATCGCCCTCGGCATCC
Dmel_r5.7
CDS
3R
12635409
12653725
-
abd-A-RB
FBtr0083388
FBpp0082829
CG10325-PB
AAF55360
NP_732176
FBtr0083387
FBgn0000014
GGAGCCGGTATCGCCGATCTGCCCAGGTATCCCTGGATGACGCTTACAGACTGGATGGGA
Dmel_r5.7
CDS
3R
12635409
12652945
-
abd-A-RA
FBtr0083387
FBpp0082828
CG10325-PA
AAF55359
NP_476693
FBtr0083381
FBgn0000015
CACCACAGCGGCCACCACCTGAACCTTAGCCTGAACATGGGTCACCATGCCGCCAAGATG
Dmel_r5.7
CDS
3R
12755111
12757327
-
Abd-B-RC
FBtr0083381;FBtr0083382;FBtr0083383;FBtr0083385
FBpp0082823
CG11648-PC
AAF55364
NP_732180
FBtr0083382
FBgn0000015
Dmel_r5.7
CDS
3R
12755111
12757327
-
Abd-B-RA
n/a
FBpp0082824
CG11648-PA
AAF55363
NP_650577
FBtr0083383
FBgn0000015
Dmel_r5.7
CDS
3R
12755111
12757327
-
Abd-B-RD
n/a
FBpp0082825
CG11648-PD
AAN13723
NP_732181
FBtr0083384
FBgn0000015
ACAGCAGTCAACTCCCACCACACATTCCACGCCCACGCATGCGGTTATGTACGAGGATCC
Dmel_r5.7
CDS
3R
12755111
12758753
-
Abd-B-RB
FBtr0083384
FBpp0082826
CG11648-PB
AAF55362
NP_524896
FBtr0083385
FBgn0000015
Dmel_r5.7
CDS
3R
12755111
12757327
-
Abd-B-RE
n/a
FBpp0089276
CG11648-PE
AAS65159
NP_996220
FBtr0075357
FBgn0000017
GCAGCAAAAGCTGACCAACGGCAATAGTACTGGGTCCGGATTCAAGGCTCAGCTGAAGAA
Dmel_r5.7
CDS
3L
16615874
16640243
-
Abl-RA
FBtr0075357;FBtr0112790
FBpp0075116
CG4032-PA
AAF49431
NP_524843
FBtr0112790
FBgn0000017
Dmel_r5.7
CDS
3L
16615874
16640243
-
Abl-RB
n/a
FBpp0111702
CG4032-PB
ABW08554
NP_001097623
FBtr0080168
FBgn0000018
TTGCGGATTCCAATGAATCGGTCTCCGTCGATCGACATACGGCCTTGCGCTTCAACCCCA
Dmel_r5.7
CDS
2L
10973536
10975212
-
abo-RA
FBtr0080168
FBpp0079757
CG6093-PA
AAF53040
NP_524784
FBtr0070072
FBgn0000022
GCAGCACAAGTTCCTGCAACAGCATTAGCTCTTATTGCAAGCCAGCAACATCGACGATTC
Dmel_r5.7
CDS
X
264127
264732
+
ac-RA
FBtr0070072
FBpp0070071
CG3796-PA
AAF45498
NP_476824
FBtr0082780
FBgn0000024
TCGTTCTGGAATGATTACTTGCCAAAAGTCAGGAGTTGGGCAGGTACTTGCGATGGCGAT
Dmel_r5.7
CDS
3R
9055380
9071854
-
Ace-RA
FBtr0082780
FBpp0082248
CG17907-PA
AAF54915
NP_476953
FBtr0074015
FBgn0000028
CACACACCAACACCTGCACGGTTCCTATCACAGCATGAATCACATGATGAGCCACCACCA
Dmel_r5.7
CDS
X
15247139
15272347
-
acj6-RA
FBtr0074015;FBtr0100328
FBpp0073832
CG9151-PA
AAF48447
NP_524876
FBtr0100326
FBgn0000028
TGTTTTCCAGGACGCTACAGTCCCTCCTATCGAAGTTCGGAGCAAATGCGTCGCTGCATG
Dmel_r5.7
CDS
X
15247139
15272347
-
acj6-RC
FBtr0100326
FBpp0099732
CG9151-PC
AAX52497
NP_001014744
FBtr0100328
FBgn0000028
Dmel_r5.7
CDS
X
15247139
15272347
-
acj6-RD
n/a
FBpp0099734
CG9151-PD
AAX52498
NP_001014743
Total number of rows: 21051 Table truncated, full table size 3538 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL15352_100718_Dmel_exp.ndf.gz
7.9 Mb
(ftp) (http)
NDF
GPL15352_100718_Dmel_exp.ngd.gz
763.8 Kb
(ftp) (http)
NGD
GPL15352_100718_Dmel_exp_HX12.ncd.gz
305 b
(ftp) (http)
NCD