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Platform GPL15289 Query DataSets for GPL15289
Status Public on Mar 03, 2012
Title Agilent-037746 S. cerevisiae simr_msm_sense_44k
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number 037746
Support glass
Coating unknown
 
Description Probes taken from agilent-designed 1x44k yeast tiling array 012713 (G4486A), GEO platform (GPL3737), which was no longer commercially available.
 
Web link http://www.agilent.com
Contributor(s) Gogol MM
Submission date Mar 01, 2012
Last update date Mar 09, 2012
Contact name Madelaine Gogol
Organization name Stowers Institute
Department Computational Biology Core
Street address 1000 E. 50th Street
City Kansas City
State/province MO
ZIP/Postal code 64110
Country USA
 
Samples (11) GSM909279, GSM909280, GSM909281, GSM909282, GSM909283, GSM909284 
Series (4)
GSE28099 Co-transcriptional histone acetylation is a consequence of histone exchange
GSE32071 Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange
GSE37042 Antisense Cryptic transcription in histone H3 K36A, K56R and K36AK56R mutant yeast strain compared to wild-type

Data table header descriptions
ID
COL Column
ROW Row
NAME Probe ID
SPOT_ID Probe ID
CONTROL_TYPE Control type, positive = pos, negative = neg
CHROMOSOMAL_LOCATION sacCer1 chromosomal location of probe
SEQUENCE Nucleotide sequence of probe
RANGE_GB GenBank accession
RANGE_START
RANGE_END

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE RANGE_GB RANGE_START RANGE_END
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 A_75_P0003012 A_75_P0003012 FALSE chr2:669603-669662 ATTCTTGCCATCTAACAATTTTACGTCAATGGAGACTAACCTGCCTCAACAGGTGTGTTG NC_001134.4 669603 669662
13 266 146 A_75_P0018993 A_75_P0018993 FALSE chr9:189735-189794 GAATTTAGCACTATTGATAACTGCCTGTGAATTTGCGAAGAGAGCATCTAATCATAAAAA NC_001141.1 189735 189794
14 266 144 A_75_P0002734 A_75_P0002734 FALSE chr2:595058-595117 TTCACGAACATAGGAAGCCGGGTATGCGTGGAGATTTAAGTTTTGCCAAGCCTCCAATTA NC_001134.4 595058 595117
15 266 142 A_75_P0038930 A_75_P0038930 FALSE chr16:272476-272535 GCTGTGTTTCAAAGCATGATCTACCTCCTGCCCAAGTACTGTACGCTGGAATGCTATATA NC_001148.2 272476 272535
16 266 140 A_75_P0033015 A_75_P0033015 FALSE chr14:432432-432491 GTAATGCATGGGCCCAAACGCTAGGCGGTACAAGAGCTGGTAGAAATGAGTATATCTTAC NC_001146.1 432432 432491
17 266 138 NA NA ignore
18 266 136 A_75_P0002435 A_75_P0002435 FALSE chr2:513386-513445 GAGGTGCTGTCCTAATACAATCGGAGAGAAGTGACTACCCCTATGCCTGCTTAACTATAA NC_001134.4 513386 513445
19 266 134 A_75_P0011446 A_75_P0011446 FALSE chr5:457901-457960 CATTCGGGGAGTTTGTATGGGGGACACTATACTTCATACGTTTATAAGGGACCAAAAAAA NC_001137.2 457901 457960
20 266 132 A_75_P0034508 A_75_P0034508 FALSE chr15:95070-95129 GGGGTTTTCGACGGGTTCTATCCTATCACTGACACCCGTTTGCATCGGGCAGATATCTAA NC_001147.3 95070 95129

Total number of rows: 45220

Table truncated, full table size 6315 Kbytes.




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