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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 27, 2012 |
| Title |
NimbleGen Mouse CGH 3x720K Whole-Genome Tiling Array [100718_MM9_WG_CGH] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
Roche NimbleGen Inc. |
| Manufacture protocol |
See www.nimblegen.com
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| Description |
Build: MM9
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| Submission date |
Feb 13, 2012 |
| Last update date |
Aug 23, 2016 |
| Contact name |
Linyu Shi |
| Organization name |
Institute of Biochemistry and Cell Biology,Shanghai Institutes for Biological Sciences,Chinese Academy of Sciences
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| Lab |
Mechanism and Application of Somatic Reprogramming
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| Street address |
320 Yueyang Road
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| City |
Shanghai |
| ZIP/Postal code |
200031 |
| Country |
China |
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| Samples (83)
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GSM874946, GSM874947, GSM874948, GSM874949, GSM942933, GSM967284
GSM967285, GSM967286, GSM1036454, GSM1036455, GSM1036456, GSM1036457, GSM1036458, GSM1036459, GSM1036460, GSM1036461, GSM1036462, GSM1113245, GSM1113246, GSM1113247, GSM1113248, GSM1173132, GSM1173133, GSM1173134, GSM1215790, GSM1215791, GSM1215792, GSM1322986, GSM1322987, GSM1322988, GSM1338260, GSM1338261, GSM1338262, GSM1338263, GSM1338264, GSM1338265, GSM1338266, GSM1338267, GSM1338268, GSM1338269, GSM1338270, GSM1338271, GSM1338272, GSM1405373, GSM1405374, GSM1405375, GSM1405376, GSM1405377, GSM1405378, GSM1405379, GSM1405380, GSM1405381, GSM1405382, GSM1405383, GSM1405384, GSM1405385, GSM1405386, GSM1405387, GSM1405388, GSM1405389, GSM1405390, GSM1405391, GSM1405392, GSM1405393, GSM1405394, GSM1405395, GSM1405396, GSM1405397, GSM1405398, GSM1405399, GSM1405400, GSM1405401, GSM1405402, GSM1422100, GSM1422101, GSM1422102, GSM1817139, GSM1817140, GSM1817141, GSM1817142, GSM1817143, GSM1817144, GSM2496037
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| Series (23)
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| GSE18019 |
Genome-Wide Dynamics of Replication Timing Revealed by In Vitro Models of Mouse Embryogenesis |
| GSE35786 |
CGH analysis of AG-haESCs (androgenetic haploid embryonic stem cells) |
| GSE35787 |
Mouse Androgenetic Haploid Embryonic Stem Cells Support Targeted Gene Transmission to Progeny |
| GSE38472 |
Replication-Timing Boundaries Facilitate Cell-type and Species-specific Regulation of a Rearranged Human Chromosome in Mouse |
| GSE39390 |
CGH analysis of androgenetic haploid embryonic stem cells |
| GSE39392 |
Androgenetic haploid embryonic stem cells |
| GSE42266 |
CNV analysis of iPS cell lines and H2A.X knockout ES cell |
| GSE42309 |
H2A.X function in mouse ESC and iPSC (ChIPSeq and CNVs) |
| GSE45716 |
Replication timing profiling by Repli-chip in Mus musculus |
| GSE48231 |
CGH analysis of chemical induced pluripotent stem cells |
| GSE48243 |
Inducing pluripotency from mouse somatic cells by small-molecule compounds |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE50207 |
Trophoblast giant cell underrepresentation (tiling) |
| GSE50585 |
Trophoblast giant cell underrepresentation |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
| GSE54737 |
Genistein Protects Hematopoietic Stem Cells against G-CSF-Induced DNA Damage |
| GSE55500 |
CGH analysis of mouse embryonic stem cells trisomic for chromosome 6, 8, 11,12 and 15 |
| GSE55501 |
Gene expression and CGH analysis of aneuploid embryonic stem cells |
| GSE58265 |
CGH analysis of melanomas and germline samples from Braf mutant mouse model |
| GSE58900 |
Dual Mechanisms by which MiR-125b Represses IRF4 to Induce Myeloid and B cell Leukemias |
| GSE70746 |
aCGH from mouse gPAK testicular teratocarcinomas |
| GSE95090 |
Mouse ESC 46C replication analysis by repli-chip |
| GSE95092 |
genome-wide analysis of replication timing by repli-chip and repli-seq |
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| Data table header descriptions |
| ID |
PROBE_ID (NimbleGen probe identifier) from .pos file |
| CHROMOSOME |
Chromosome number |
| RANGE_GB |
Chromosome ACCESSION.VERSION |
| SPOT_ID |
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| SEQUENCE |
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| RANGE_START |
POSITION. Probe start position |
| GC |
The percent GC of the probe sequence |
| LENGTH |
Probe length |
| RANGE_END |
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| Data table |
| ID |
CHROMOSOME |
RANGE_GB |
SPOT_ID |
SEQUENCE |
RANGE_START |
GC |
LENGTH |
RANGE_END |
| CHR10FS003002777 |
chr10 |
NC_000076.5 |
|
TGTCATCTTAATGTACCCTGTGCCTGGATATACTTGAAACTTCTACTCCTGTGTAAGT |
3002777 |
0.4 |
58 |
3002834 |
| CHR10FS003003474 |
chr10 |
NC_000076.5 |
|
GCAGTTTCTAGATTTTCCATCCGTTGGGCTCAGCAACAATCTTTGTCTCT |
3003474 |
0.44 |
50 |
3003523 |
| CHR10FS003009179 |
chr10 |
NC_000076.5 |
|
TTTCAAAAGATCATGCTACAGTCTGTGCACGAGGTGCCAAAGCAAGTGTG |
3009179 |
0.46 |
50 |
3009228 |
| CHR10FS003012029 |
chr10 |
NC_000076.5 |
|
CTCCTTACAGACCGCATTGATGTAACGAGGTTTCATGCGAGGTAAATTAGT |
3012029 |
0.43 |
51 |
3012079 |
| CHR10FS003014147 |
chr10 |
NC_000076.5 |
|
TGACTAGTACACGTGGCTAACTAGAAAGCTCTGGTATGTGCTTACTTAATGCT |
3014147 |
0.42 |
53 |
3014199 |
| CHR10FS003018290 |
chr10 |
NC_000076.5 |
|
AATGTCCCTCACAATCACTATCAAGGTCCCTATCAAGGCAATCACTCTGT |
3018290 |
0.44 |
50 |
3018339 |
| CHR10FS003022469 |
chr10 |
NC_000076.5 |
|
TGTAGAGTGGAGTTCGTTCTGGAATCTGGTCCGTTTACACAACACCCATT |
3022469 |
0.46 |
50 |
3022518 |
| CHR10FS003026571 |
chr10 |
NC_000076.5 |
|
TCAGTGGTATAATTGCTGGTATCCGTGATCCAGTGAAGAACTTTCCACCC |
3026571 |
0.46 |
50 |
3026620 |
| CHR10FS003029938 |
chr10 |
NC_000076.5 |
|
TCAAATGAAGTAGCATCATGGAGGTATCCTAGAGCACGGATGTGTCATTC |
3029938 |
0.44 |
50 |
3029987 |
| CHR10FS003034088 |
chr10 |
NC_000076.5 |
|
TATTTGCCTTGTGATCAGTTCGTTATCAGTGCCCGTGTCAAGCAGTCTATA |
3034088 |
0.43 |
51 |
3034138 |
| CHR10FS003037417 |
chr10 |
NC_000076.5 |
|
ATAAGTCTTTTGGGTCCAGCAGAATAGTGGTAGGCTTGTAGGTACAAGGAA |
3037417 |
0.43 |
51 |
3037467 |
| CHR10FS003039460 |
chr10 |
NC_000076.5 |
|
CCTTGGGAACAAATACTAGTCTACAAAAACTTGTATGACTCATCCGAACCAGCACAA |
3039460 |
0.4 |
57 |
3039516 |
| CHR10FS003042397 |
chr10 |
NC_000076.5 |
|
ATAGGCTGGTCATGGCGCATGAGAAACACAACGAATCTTGGGTCTAATTTTT |
3042397 |
0.42 |
52 |
3042448 |
| CHR10FS003048283 |
chr10 |
NC_000076.5 |
|
AGGCAATTACACTCATTGACTAAGCGGTTTGTGGTAAGCGTCAGACTTTG |
3048283 |
0.44 |
50 |
3048332 |
| CHR10FS003051779 |
chr10 |
NC_000076.5 |
|
TGACAACATACCTGATTGGTCCGTATGCCTTTTAGGGCTGTAGACTTTGT |
3051779 |
0.44 |
50 |
3051828 |
| CHR10FS003056050 |
chr10 |
NC_000076.5 |
|
TTCAGCGTTTTCTAGGAAGATTTACTCCCGCAAACTCCATAGTTGCCAAG |
3056050 |
0.44 |
50 |
3056099 |
| CHR10FS003056435 |
chr10 |
NC_000076.5 |
|
AACTTTCAGCTTTGACAGGGCACGAAGACGTGCAAAGCAAATGGTAATTG |
3056435 |
0.44 |
50 |
3056484 |
| CHR10FS003061196 |
chr10 |
NC_000076.5 |
|
GTCCCAGCCAAGTCGTTGCAGTTATGATCTCAGATCCAATAGGGAATCTA |
3061196 |
0.46 |
50 |
3061245 |
| CHR10FS003065272 |
chr10 |
NC_000076.5 |
|
GGTGAACTTATGTAAACAACGTGTCTGATGGATTTTGAAGTTGACGGTGAGATGTGT |
3065272 |
0.4 |
57 |
3065328 |
| CHR10FS003067612 |
chr10 |
NC_000076.5 |
|
AGCATGTGCCAGACGACTAAGCAGATTACTATGCGTGTTTCACACAGATTA |
3067612 |
0.43 |
51 |
3067662 |
Total number of rows: 713358
Table truncated, full table size 80237 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL15225_100718_MM9_WG_CGH.ndf.gz |
38.9 Mb |
(ftp)(http) |
NDF |
| GPL15225_100718_MM9_WG_CGH.pos.gz |
5.4 Mb |
(ftp)(http) |
POS |
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