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Status
Public on Jul 25, 2001
Title
HP_002
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Helicobacter pylori
Description
A microarray with 4623 spot features.
Submission date
Jul 25, 2001
Last update date
May 26, 2005
Organization
Stanford Microarray Database (SMD)
E-mail(s)
array@genome.stanford.edu Phone
650-498-6012
URL
http://genome-www5.stanford.edu/ Department
Stanford University, School of Medicine
Street address
300 Pasteur Drive
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Samples (423)
GSM470 , GSM471 , GSM472 , GSM473 , GSM474 , GSM475
GSM476 ,
GSM477 ,
GSM478 ,
GSM479 ,
GSM480 ,
GSM481 ,
GSM482 ,
GSM483 ,
GSM484 ,
GSM485 ,
GSM486 ,
GSM487 ,
GSM488 ,
GSM489 ,
GSM490 ,
GSM491 ,
GSM492 ,
GSM493 ,
GSM494 ,
GSM495 ,
GSM496 ,
GSM497 ,
GSM498 ,
GSM499 ,
GSM500 ,
GSM501 ,
GSM502 ,
GSM503 ,
GSM504 ,
GSM505 ,
GSM69877 ,
GSM69878 ,
GSM69879 ,
GSM69880 ,
GSM69881 ,
GSM69882 ,
GSM69947 ,
GSM69948 ,
GSM69949 ,
GSM69950 ,
GSM69951 ,
GSM69952 ,
GSM69953 ,
GSM69954 ,
GSM69955 ,
GSM69956 ,
GSM69957 ,
GSM69958 ,
GSM69959 ,
GSM69960 ,
GSM69961 ,
GSM69962 ,
GSM69963 ,
GSM69964 ,
GSM69965 ,
GSM69966 ,
GSM69967 ,
GSM69968 ,
GSM69969 ,
GSM69970 ,
GSM69971 ,
GSM69972 ,
GSM69973 ,
GSM69974 ,
GSM69975 ,
GSM69976 ,
GSM69977 ,
GSM69978 ,
GSM69979 ,
GSM69980 ,
GSM69981 ,
GSM69982 ,
GSM69983 ,
GSM69984 ,
GSM69985 ,
GSM69986 ,
GSM69987 ,
GSM69988 ,
GSM69989 ,
GSM69990 ,
GSM69991 ,
GSM69992 ,
GSM69993 ,
GSM69994 ,
GSM69995 ,
GSM69996 ,
GSM69997 ,
GSM69998 ,
GSM69999 ,
GSM70000 ,
GSM70001 ,
GSM70002 ,
GSM70003 ,
GSM70004 ,
GSM70005 ,
GSM70006 ,
GSM70007 ,
GSM70008 ,
GSM70009 ,
GSM70010 ,
GSM70011 ,
GSM70012 ,
GSM70013 ,
GSM70014 ,
GSM70015 ,
GSM71850 ,
GSM71851 ,
GSM71852 ,
GSM71853 ,
GSM71854 ,
GSM71855 ,
GSM71856 ,
GSM71857 ,
GSM71858 ,
GSM71859 ,
GSM71860 ,
GSM71861 ,
GSM71862 ,
GSM71863 ,
GSM71864 ,
GSM71865 ,
GSM71866 ,
GSM71867 ,
GSM71868 ,
GSM71869 ,
GSM71870 ,
GSM71871 ,
GSM71872 ,
GSM71873 ,
GSM71874 ,
GSM71875 ,
GSM71876 ,
GSM71877 ,
GSM71878 ,
GSM71879 ,
GSM71880 ,
GSM71881 ,
GSM71882 ,
GSM71883 ,
GSM71884 ,
GSM71885 ,
GSM71886 ,
GSM71887 ,
GSM71888 ,
GSM71889 ,
GSM71892 ,
GSM73593 ,
GSM73594 ,
GSM73595 ,
GSM73596 ,
GSM73597 ,
GSM73598 ,
GSM73599 ,
GSM73600 ,
GSM73601 ,
GSM73602 ,
GSM73603 ,
GSM73604 ,
GSM73605 ,
GSM73606 ,
GSM73607 ,
GSM73608 ,
GSM73609 ,
GSM73610 ,
GSM73611 ,
GSM73612 ,
GSM73613 ,
GSM73614 ,
GSM73615 ,
GSM73616 ,
GSM73617 ,
GSM73618 ,
GSM73619 ,
GSM73620 ,
GSM73621 ,
GSM73622 ,
GSM73623 ,
GSM73624 ,
GSM73625 ,
GSM78674 ,
GSM78675 ,
GSM78676 ,
GSM78677 ,
GSM78678 ,
GSM78683 ,
GSM78693 ,
GSM78694 ,
GSM78695 ,
GSM78708 ,
GSM78709 ,
GSM78710 ,
GSM78711 ,
GSM78715 ,
GSM78716 ,
GSM78717 ,
GSM78718 ,
GSM78719 ,
GSM78720 ,
GSM78721 ,
GSM78722 ,
GSM78723 ,
GSM78724 ,
GSM78725 ,
GSM78726 ,
GSM78727 ,
GSM78728 ,
GSM78729 ,
GSM78730 ,
GSM78731 ,
GSM78732 ,
GSM78733 ,
GSM78734 ,
GSM78735 ,
GSM78736 ,
GSM78737 ,
GSM78738 ,
GSM78739 ,
GSM78740 ,
GSM78741 ,
GSM78742 ,
GSM78743 ,
GSM78744 ,
GSM78748 ,
GSM78753 ,
GSM78755 ,
GSM78757 ,
GSM78758 ,
GSM78759 ,
GSM78760 ,
GSM78761 ,
GSM78762 ,
GSM78763 ,
GSM78764 ,
GSM78775 ,
GSM78778 ,
GSM78780 ,
GSM78781 ,
GSM78783 ,
GSM78784 ,
GSM78787 ,
GSM78791 ,
GSM78793 ,
GSM78795 ,
GSM78800 ,
GSM78808 ,
GSM84339 ,
GSM84340 ,
GSM84341 ,
GSM84342 ,
GSM84343 ,
GSM84344 ,
GSM84345 ,
GSM84346 ,
GSM84347 ,
GSM84348 ,
GSM84349 ,
GSM84350 ,
GSM84351 ,
GSM84352 ,
GSM84353 ,
GSM84354 ,
GSM84355 ,
GSM84356 ,
GSM84357 ,
GSM84358 ,
GSM84359 ,
GSM84360 ,
GSM84361 ,
GSM87822 ,
GSM87823 ,
GSM87824 ,
GSM87825 ,
GSM87826 ,
GSM87827 ,
GSM87828 ,
GSM87829 ,
GSM88792 ,
GSM88793 ,
GSM88794 ,
GSM88795 ,
GSM88796 ,
GSM88797 ,
GSM88798 ,
GSM88799 ,
GSM88800 ,
GSM88801 ,
GSM88802 ,
GSM88803 ,
GSM88804 ,
GSM88805 ,
GSM88806 ,
GSM88807 ,
GSM88808 ,
GSM88809 ,
GSM88810 ,
GSM88811 ,
GSM88812 ,
GSM88813 ,
GSM88814 ,
GSM88815 ,
GSM88816 ,
GSM88817 ,
GSM88818 ,
GSM88819 ,
GSM88820 ,
GSM88821 ,
GSM88822 ,
GSM88823 ,
GSM91122 ,
GSM91123 ,
GSM91124 ,
GSM91125 ,
GSM91126 ,
GSM91127 ,
GSM91128 ,
GSM91129 ,
GSM95038 ,
GSM95039 ,
GSM95040 ,
GSM95041 ,
GSM95042 ,
GSM95043 ,
GSM95044 ,
GSM95045 ,
GSM95046 ,
GSM95047 ,
GSM95048 ,
GSM95049 ,
GSM95050 ,
GSM95051 ,
GSM95052 ,
GSM95053 ,
GSM95054 ,
GSM95055 ,
GSM95056 ,
GSM95057 ,
GSM95058 ,
GSM95059 ,
GSM95060 ,
GSM95061 ,
GSM150788 ,
GSM150789 ,
GSM150790 ,
GSM150791 ,
GSM150792 ,
GSM150793 ,
GSM184223 ,
GSM184235 ,
GSM184237 ,
GSM184238 ,
GSM184239 ,
GSM184240 ,
GSM184241 ,
GSM184242 ,
GSM184243 ,
GSM184244 ,
GSM184245 ,
GSM184246 ,
GSM184247 ,
GSM184249 ,
GSM184250 ,
GSM184251 ,
GSM184252 ,
GSM184253 ,
GSM184254 ,
GSM184255 ,
GSM184256 ,
GSM184257 ,
GSM184258 ,
GSM184261 ,
GSM184262 ,
GSM184264 ,
GSM184265 ,
GSM184266 ,
GSM184267 ,
GSM184268 ,
GSM184269 ,
GSM184270 ,
GSM184271 ,
GSM184272 ,
GSM184273 ,
GSM184275 ,
GSM184277 ,
GSM184279 ,
GSM184281 ,
GSM184284 ,
GSM184286 ,
GSM184288 ,
GSM184290 ,
GSM184292 ,
GSM184293 ,
GSM184294 ,
GSM184295 ,
GSM184296 ,
GSM184297 ,
GSM184298 ,
GSM184299 ,
GSM184300 ,
GSM184301 ,
GSM184302 ,
GSM184303 ,
GSM184304 ,
GSM184305 ,
GSM184306 ,
GSM184308 ,
GSM184310 ,
GSM184312 ,
GSM184315 ,
GSM184317 ,
GSM184319 ,
GSM184321 ,
GSM184322 ,
GSM184323 ,
GSM184324 ,
GSM184325 ,
GSM184326 ,
GSM184327 Series (15)
GSE6 Genetic diversity among Helicobacter pylori strains
GSE3135 H. pylori strain comparisons
GSE3137 H. pilory diversity in human
GSE3197 MATT mapping of Transposon insertions sites of strain G27 GPS-cat library
GSE3272 Mouse response to H. pylory
GSE3478 Comparison of H. pylori subclones
GSE3479 Helicobacter pylori bacterial populations
GSE3636 Growth phase dependent gene expression and motility_3 time courses
GSE3833 Acid exposure
GSE3888 Growth phase-dependent response of Helicobacter pylori to iron starvation.
GSE3988 Chronic Helicobacter pylori Infection with Sydney Strain 1 and Mouse-Adapted Sydney Strain 2000
GSE4160 Fur mutant analysis
GSE6530 Mouse adapted strain CGH
GSE6531 Identification of Helicobacter pylori genes contributing to stomach colonization.
GSE7618 Array CGH of Mexican Patient Isolates and BCS100 Strain
Data table header descriptions ID NAME name of spot
ORF TIGR_ID or ASTRA_ID
ORF TIGR_ID or ASTRA_ID
SPOT_ID DESCRIPTION description of spot
PROCESS OPERON AMPLICON LENGTH GENE NAME SECTOR spot sector grid coordinate
SECTORROW spot row grid coordinate
SECTORCOL spot column grid coordinate
PLATE clone plate identifier
PROW clone plate row
PCOL clone plate column
FAILED IS_CONTAMINATED
Data table ID NAME ORF ORF SPOT_ID DESCRIPTION PROCESS OPERON AMPLICON LENGTH GENE NAME SECTOR SECTORROW SECTORCOL PLATE PROW PCOL FAILED IS_CONTAMINATED 1
HPY1213
HP1213
JHP1136
polynucleotide phosphorylase , POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
Transcription, Degradation of RNA
633
2014
pnp
1
1
1
1
A
1
0
U
2
HPY0453
HP0453
227
3012
1
1
2
1
A
5
0
U
3
HPY0775
HP0775
JHP0712
penta-phosphate guanosine-3'-pyrophosphohydrolase , GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
Regulatory Functions, General
393
2265
spoT
1
1
3
1
A
9
0
U
4
HPY0527
HP0527
JHP0476
cag pathogenicity island protein , cag island protein
Cellular Processes, Transformation
267
5735
orf13/14
1
1
4
1
A
13
1
U
5
HPY0592
HP0592
type III restriction enzyme R protein
DNA metabolism,Restriction/modification
302
2956
res
1
1
5
1
A
17
1
U
6
HPY1116
HP1116
JHP1044
575
2788
1
1
6
1
A
21
1
U
7
HPY0922
HP0922
JHP0856
toxin-like outer membrane protein, putative vacuolating cytotoxin (VacA) paralog
Cell envelope, Other
472
4706
1
1
7
1
E
1
1
U
8
HPY0547
HP0547
JHP0495
cag pathogenicity island protein , cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
Cellular Processes, Transformation
276
3484
cagA
1
1
8
1
E
5
1
U
9
HPY1222
HP1222
JHP1143
D-lactate dehydrogenase
energy metabolism, aerobic
637
2802
dld
1
1
9
1
E
9
0
U
10
HPY1198
HP1198
JHP1121
DNA-directed RNA polymerase, beta subunit
Transcription, DNA-dependent RNA polymerase
621
8631
rpoB
1
1
10
1
E
13
1
U
11
HPY0919
HP0919
JHP0853
carbamoyl-phosphate synthase (glutamine-hydrolysing) , CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN
Pyrimidine ribonucleotide biosynthesis
469
3179
pyrAb
1
1
11
1
E
17
1
U
12
HPY0441
HP0441
VirB4 homolog
Cellular Processes, Transformation
223
2384
1
1
12
1
E
21
0
U
13
HPY1636
JHP0928
1035
6609
1
1
13
1
I
1
1
U
14
HPY0199
HP0199
JHP0185
104
300
1
1
14
1
I
5
0
U
15
HPY0967
HP0967
virulence associated protein D
Other categories, Adaptations and atypical conditions
490
240
vapD
1
1
15
1
I
9
1
U
16
HPY1040
HP1040
JHP0384
ribosomal protein S15 , 30S RIBOSOMAL PROTEIN S15
Translation, Ribosomal proteins: synthesis and modification
535
223
rpsO
1
1
16
1
I
13
0
U
17
HPY1295
HP1295
JHP1215
ribosomal protein S11 , 30S RIBOSOMAL PROTEIN S11
Translation, Ribosomal proteins: synthesis and modification
665
341
rpsK
1
1
17
1
I
17
0
U
18
HPY0938
HP0938
JHP0873
478
204
1
2
1
1
I
21
0
U
19
HPY1046
HP1046
JHP0379
conserved hypothetical protein
Hypothetical, General
540
350
1
2
2
1
M
1
0
U
20
HPY0046
HP0046
24
103
1
2
3
1
M
5
1
U
4608 498 Kbytes .Supplementary data files not provided
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