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Platform GPL14628 Query DataSets for GPL14628
Status Public on Sep 27, 2011
Title Agilent-026687 Whole Mouse Genome Microarray 4x44K v2 (Probe Name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Agilent technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
 
Submission date Sep 27, 2011
Last update date Sep 28, 2011
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (18) GSM802529, GSM802530, GSM802531, GSM802532, GSM802533, GSM802534 
Series (2)
GSE32428 Mouse and zebrafish genes in vitro and in vivo
GSE62304 Comparison of murine whole gene expression on ligand immobilized surfaces

Data table header descriptions
ID
ORF
Entrez_Gene_ID
Description
GO biological process
GO cellular component
GO molecular function
Map
SEQUENCE
Chromosome End Index(Avadis)
Chromosome Number(Avadis)
Chromosome Start Index(Avadis)
Chromosome Strand(Avadis)
Common name
ControlType
Cytoband
Dbid
EnsemblID
GB_ACC
GO(Avadis)
REFSEQ
TIGRID
UniGene

Data table
ID ORF Entrez_Gene_ID Description GO biological process GO cellular component GO molecular function Map SEQUENCE Chromosome End Index(Avadis) Chromosome Number(Avadis) Chromosome Start Index(Avadis) Chromosome Strand(Avadis) Common name ControlType Cytoband Dbid EnsemblID GB_ACC GO(Avadis) REFSEQ TIGRID UniGene
A_51_P454913 Camkv 235604 Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430043A01 product:similar to Calmodulin binding protein kinase [Fugu rubripes], full insert sequence [AK085143] GO:0006468(protein amino acid phosphorylation) GO:0004672(protein kinase activity);GO:0004674(protein serine/threonine kinase activity);GO:0005524(ATP binding);GO:0016740(transferase activity) chr9:107808225..107808284 CCACTTAGACCAAAAAGATTTCATTCTGTCTTCCCCGGCTGGAGCAGACCTACTTTATAA 107808284 chr9 107808225 + AK085143 false 9qF2 gb:AK085143;riken:D430043A01;tc:TC1616132 AK085143 GO:0006468|GO:0004672|GO:0004674|GO:0005524|GO:0016740 TC1616132 Mm.274540
A_52_P311491 Ibtk 108837 Mus musculus inhibitor of Bruton agammaglobulinemia tyrosine kinase (Ibtk), mRNA [NM_001081282] GO:0001933(negative regulation of protein amino acid phosphorylation);GO:0051209(release of sequestered calcium ion into cytosol) GO:0005737(cytoplasm);GO:0016020(membrane) GO:0005515(protein binding);GO:0019901(protein kinase binding);GO:0030292(protein tyrosine kinase inhibitor activity) chr9:85484480..85484421 CCTAATTGTGAAAGAATCGGTTTCTTAAGGTTTCTACAAACAAGCGTAAGATTACTGAAG 85484480 chr9 85484421 - NM_001081282 false 9qE3.1 ref:NM_001081282;gb:BC060722;gb:XM_895761;ens:ENSMUST00000039213 ENSMUST00000039213 NM_001081282 GO:0001933|GO:0051209|GO:0005515|GO:0019901|GO:0030292|GO:0005737|GO:0016020 NM_001081282 TC1602264 Mm.22315
A_51_P323531 1700021P22Rik 75538 PREDICTED: Mus musculus RIKEN cDNA 1700021P22 gene, transcript variant 1 (1700021P22Rik), mRNA [XM_133423] chr7:44369097..44369156 GACCAGAAATCAAGTCAGCTCAGCTCAGAGCCAGAGAGATGGAATTTTAAACTTAATAAA 44369156 chr7 44369097 + XM_133423 false 7qB3 gb:XM_133423;ref:XM_001002658;ref:XM_917156;ref:XM_001002623 XM_133423 XM_001002658 TC1643341 Mm.258841
A_51_P183025 Oas1d 100535 Mus musculus 2'-5' oligoadenylate synthetase 1D (Oas1d), mRNA [NM_133893] GO:0001541(ovarian follicle development);GO:0001542(ovulation (sensu Mammalia));GO:0006955(immune response);GO:0009790(embryonic development);GO:0051348(negative regulation of transferase activity) GO:0005737(cytoplasm) GO:0001730(2'-5'-oligoadenylate synthetase activity);GO:0003725(double-stranded RNA binding);GO:0004857(enzyme inhibitor activity);GO:0005515(protein binding);GO:0005524(ATP binding);GO:0016740(transferase activity) chr5:121182118..121182177 TGCACTGTTTCTGCAACATGCAGGCTGGGTTTATGGTAGTGCAGGAAAATAAAATTGCAT 121182177 chr5 121182118 + NM_133893 false 5qF ref:NM_133893;ref:NM_145228;gb:AB067532;gb:AB067530 ENSMUST00000044224 NM_133893 GO:0001541|GO:0001542|GO:0006955|GO:0009790|GO:0051348|GO:0001730|GO:0003725|GO:0004857|GO:0005515|GO:0005524|GO:0016740|GO:0005737 NM_133893 TC1576068 Mm.247620
A_52_P179250 Myst4 54169 Mus musculus mRNA for mKIAA0383 protein. [AK129129] GO:0006334(nucleosome assembly);GO:0006350(transcription);GO:0006355(regulation of transcription, DNA-dependent);GO:0016481(negative regulation of transcription);GO:0016568(chromatin modification);GO:0016573(histone acetylation);GO:0045941(positive regulation of transcription) GO:0000786(nucleosome);GO:0005634(nucleus) GO:0003677(DNA binding);GO:0004402(histone acetyltransferase activity);GO:0004406(H3/H4 histone acetyltransferase activity);GO:0005515(protein binding);GO:0008134(transcription factor binding);GO:0008270(zinc ion binding);GO:0008415(acyltransferase activity);GO:0016407(acetyltransferase activity);GO:0016563(transcriptional activator activity);GO:0016564(transcriptional repressor activity);GO:0016740(transferase activity);GO:0046872(metal ion binding) chr14:20309860..20309919 TATGAGGACTTTGGAAAGTCAAATATTCTGAGAGACTTCAGTTATCACACTTTGTAGCAG 20309919 chr14 20309860 + AK129129 false 14qA3 gb:AK129129 AK129129 GO:0006334|GO:0006350|GO:0006355|GO:0016481|GO:0016568|GO:0016573|GO:0045941|GO:0003677|GO:0004402|GO:0004406|GO:0005515|GO:0008134|GO:0008270|GO:0008415|GO:0016407|GO:0016563|GO:0016564|GO:0016740|GO:0046872|GO:0000786|GO:0005634 Mm.248967
A_52_P370935 Glcci1 170772 Mus musculus glucocorticoid induced transcript 1 (Glcci1), transcript variant 1, mRNA [NM_133236] GO:0007049(cell cycle);GO:0007059(chromosome segregation);GO:0008150(biological_process);GO:0051301(cell division) GO:0005737(cytoplasm);GO:0016021(integral to membrane) GO:0000166(nucleotide binding);GO:0003677(DNA binding);GO:0005515(protein binding);GO:0005524(ATP binding) chr6:8543357..8543416 AAGTACTTAGCATCACAAAATAGCTATTAACACTGATCTTGGCAGGGACCGACTTATATT 8543416 chr6 8543357 + NM_133236 false 6qA1 ref:NM_133236;gb:BC050802;gb:AF374476;gb:AY098636 ENSMUST00000050350 NM_133236 GO:0007049|GO:0007059|GO:0008150|GO:0051301|GO:0000166|GO:0003677|GO:0005515|GO:0005524|GO:0005737|GO:0016021 NM_133236 TC1591510 Mm.210787
A_52_P30065 Nsun6 74455 Mus musculus NOL1/NOP2/Sun domain family 6 (Nsun6), mRNA [NM_028950] GO:0003723(RNA binding);GO:0008168(methyltransferase activity);GO:0016740(transferase activity) chr2:14966890..14966831 CTTGGGCCCTGCTCATTCCAGAACTCAGCACTGAAAGGCATTCTTGTGCTCGTCCATTGG 14966890 chr2 14966831 - NM_028950 false 2qA2 ref:NM_028950;gb:AK042750;gb:BC053751;ens:ENSMUST00000076435 ENSMUST00000076435 NM_028950 GO:0003723|GO:0008168|GO:0016740 NM_028950 TC1596393 Mm.195859
A_51_P415029 Ints6 18130 Mus musculus integrator complex subunit 6 (Ints6), mRNA [NM_008715] GO:0016180(snRNA processing) GO:0005615(extracellular space);GO:0005634(nucleus) GO:0003676(nucleic acid binding);GO:0005515(protein binding);GO:0005524(ATP binding);GO:0008026(ATP-dependent helicase activity) chr14:61647772..61647713 AATGCTAATAGAACAACTGGAGAACTTCTTGGATGAAATTCATCGAAGAGCCAATCAAAT 61647772 chr14 61647713 - NM_008715 false 14qD1 ref:NM_008715;gb:BC059263;gb:U57368;ens:ENSMUST00000053959 ENSMUST00000053959 NM_008715 GO:0016180|GO:0003676|GO:0005515|GO:0005524|GO:0008026|GO:0005615|GO:0005634 NM_008715 TC1575157 Mm.319684
A_51_P117881 Leap2 259301 Mus musculus liver-expressed antimicrobial peptide 2 (Leap2), mRNA [NM_153069] GO:0042742(defense response to bacterium) chr11:53265778..53265719 ACGACATTTTGGTTGGAGATAGATAAGTGAAGTAGTCTTTGTTTTTAATATTTAAAGACG 53265778 chr11 53265719 - NM_153069 false 11qB1.3 ref:NM_153069;gb:CA458914;gb:AJ409055;ens:ENSMUST00000036045 ENSMUST00000036045 NM_153069 GO:0042742 NM_153069 TC1587131 Mm.24283
A_52_P731333 AK042046 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630054F14 product:unclassifiable, full insert sequence. [AK042046] chr12:52577390..52577331 GGTATTCGACGCAGCAGAATTCTGTTTTCAAGTCTAGGACTTTTAGTGTTTTAATCCTGC 52577390 chr12 52577331 - AK042046 false 12qC1 gb:AK042046;gb:BX514830;riken:A630054F14 AK042046 Mm.453336
A_51_P105709 Trip13 69716 Mus musculus thyroid hormone receptor interactor 13 (Trip13), mRNA [NM_027182] GO:0000166(nucleotide binding);GO:0004872(receptor activity);GO:0005515(protein binding);GO:0005524(ATP binding);GO:0017111(nucleoside-triphosphatase activity);GO:0042802(identical protein binding) chr13:74378729..74378670 TAGTGCACAGGAGCAGTGTGTGCTTTCTATGGTCACGTCAATCAGGCAATGTGTTTTGTT 74378729 chr13 74378670 - NM_027182 false 13qC1 ref:NM_027182;ens:ENSMUST00000022053;gb:AK010336;gb:AK151568 ENSMUST00000022053 NM_027182 GO:0000166|GO:0004872|GO:0005515|GO:0005524|GO:0017111|GO:0042802 NM_027182 TC1578427 Mm.275095
A_51_P517672 Rnf152 320311 Mus musculus ring finger protein 152 (Rnf152), mRNA [NM_178779] GO:0005515(protein binding);GO:0008270(zinc ion binding);GO:0046872(metal ion binding) chr1:107107792..107107733 ACAGAAAATCTAATAAATAAGAGTCTGATGAAATCCCAGTTCACTTTTGAGCTCTTTCCC 107107792 chr1 107107733 - NM_178779 false 1qE2.1 ref:NM_178779;gb:AK044638;ens:ENSMUST00000058688;riken:A930029B02 ENSMUST00000058688 NM_178779 GO:0005515|GO:0008270|GO:0046872 NM_178779 TC1604598 Mm.389162
A_51_P517182 Hrasls3 225845 Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630015C01 product:H-REV 107 PROTEIN homolog [Rattus norvegicus], full insert sequence. [AK052657] GO:0007049(cell cycle);GO:0045786(negative regulation of progression through cell cycle) GO:0016020(membrane);GO:0016021(integral to membrane) chr19:7648597..7648656 GCACGATGCAACAATAAACAGTATTATAATTCCTGCTATGTGGCCATCTGTTAGTGGCCT 7648656 chr19 7648597 + AK052657 false 19qA gb:AK052657;riken:D630015C01;tc:TC1591938;nap:NAP086666-1 AK052657 GO:0007049|GO:0045786|GO:0016020|GO:0016021 TC1591938 Mm.274810
A_51_P310196 Cd40lg 21947 Mus musculus CD40 ligand (Cd40lg), mRNA [NM_011616] GO:0006916(anti-apoptosis);GO:0006952(defense response);GO:0006954(inflammatory response);GO:0006955(immune response);GO:0007159(leukocyte adhesion);GO:0007165(signal transduction);GO:0030168(platelet activation);GO:0030183(B cell differentiation);GO:0042100(B cell proliferation);GO:0045190(isotype switching);GO:0048305(immunoglobulin secretion);GO:0051023(regulation of immunoglobulin secretion) GO:0005615(extracellular space);GO:0005625(soluble fraction);GO:0005886(plasma membrane);GO:0016020(membrane);GO:0016021(integral to membrane) GO:0005125(cytokine activity);GO:0005164(tumor necrosis factor receptor binding);GO:0005174(CD40 receptor binding) chrX:53570673..53570732 AACAGATAACTAATGAGCACAGTTTTGTTGTTTTATGGGTGTGTCGTTCAATGGACAGTG 53570732 chrX 53570673 + NM_011616 false XqA5 ref:NM_011616;gb:X65453;ens:ENSMUST00000033466;tc:TC1594456 ENSMUST00000033466 NM_011616 GO:0006916|GO:0006952|GO:0006954|GO:0006955|GO:0007159|GO:0007165|GO:0030168|GO:0030183|GO:0042100|GO:0045190|GO:0048305|GO:0051023|GO:0005125|GO:0005164|GO:0005174|GO:0005615|GO:0005625|GO:0005886|GO:0016020|GO:0016021 NM_011616 TC1594456 Mm.4861
A_51_P438924 Cmtm5 67272 Mus musculus CKLF-like MARVEL transmembrane domain containing 5 (Cmtm5), mRNA [NM_026066] GO:0006935(chemotaxis) GO:0005615(extracellular space);GO:0016020(membrane);GO:0016021(integral to membrane) GO:0005125(cytokine activity) chr14:53893315..53893374 ATCTTTGAATTCACCGAACCCCAAGTACCCACCATCTATATTCCACGTTTTCAGAGATGT 53893374 chr14 53893315 + NM_026066 false 14qC2 ref:NM_026066;gb:DQ115983;gb:AK005168;ens:ENSMUST00000037814 ENSMUST00000037814 NM_026066 GO:0006935|GO:0005125|GO:0005615|GO:0016020|GO:0016021 NM_026066 NP1478296 Mm.41614
A_51_P126643 Bri3 55950 Mus musculus brain protein I3 (Bri3), mRNA [NM_018772] GO:0016020(membrane);GO:0016021(integral to membrane) chr5:144517720..144517779 ATGTTGTGTACAATAGTTTTATTTGATTAAGCTTCTGGACTGTTTTGTAAAGTGTGGCGG 144517779 chr5 144517720 + NM_018772 false 5qG2 ref:NM_018772;gb:DV063122;gb:BC005677;ens:ENSMUST00000056578 ENSMUST00000056578 NM_018772 GO:0016020|GO:0016021 NM_018772 TC1576581 Mm.38011
A_52_P368214 Spire1 68166 Mus musculus spire homolog 1 (Drosophila) (Spire1), transcript variant 1, mRNA [NM_194355] GO:0048193(Golgi vesicle transport) GO:0005794(Golgi apparatus) GO:0003674(molecular_function);GO:0008270(zinc ion binding) chr18:67614078..67614019 TACAGTCATTCTAAAAATGATGTTTTGAAGAGATATGTGGTTAATACCGTGAACTCACGC 67614078 chr18 67614019 - NM_194355 false 18qE1 ref:NM_194355;ref:NM_176832;gb:BC094375;gb:BC058669 ENSMUST00000045105 NM_194355 GO:0048193|GO:0003674|GO:0008270|GO:0005794 NM_194355 TC1687031 Mm.208723
A_52_P5905 4933407L21Rik 71141 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933407L21 product:4933407L21RIK PROTEIN, full insert sequence. [AK016730] chr1:87762841..87762900 CTTATAGCCTATCATGAGGAGCATGTAAAATGTCTCACTGCTTGAAATAAACCTGTCTCA 87762900 chr1 87762841 + AK016730 false 1qC5 gb:AK016730;gb:AK037440;ref:XM_976810;ref:XM_977019 AK016730 XM_976810 TC1589062 Mm.444245
A_51_P126647 1810009A15Rik 66276 Mus musculus RIKEN cDNA 1810009A15 gene (1810009A15Rik), mRNA [NM_025463] chr19:8957624..8957683 TTTGGAAAAAATATTAGCATATTTCACTTTCCTAGACACCTCTTCTACAGCGGACCCTGA 8957683 chr19 8957624 + NM_025463 false 19qA ref:NM_025463;gb:BU511454;gb:AK007390;ens:ENSMUST00000096251 ENSMUST00000096251 NM_025463 NM_025463 TC1667604 Mm.27503
A_52_P537887 TC1650039 MTO1_MOUSE (Q923Z3) Protein MTO1 homolog, mitochondrial precursor, partial (13%) [TC1650039] chr9:78260695..78260754 CTCACCTACTTTACTTATACATAAGGATAGAATTAGTGTAACATAGGACTTCTTGTAGGG 78260754 chr9 78260695 + TC1650039 false 9qE1 tc:TC1650039;nap:NAP041826-1 TC1650039

Total number of rows: 41233

Table truncated, full table size 24275 Kbytes.




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