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Platform GPL14568 Query DataSets for GPL14568
Status Public on Mar 02, 2012
Title Rice_135k_tiling_V2 array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Oryza sativa
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID; 27,488 Rice Gene Name : IRGSP, RAP2 database (http://rapdb.lab.nig.ac.jp)) features. The .ndf file is linked below as supplementary files.
native array description file: Rice_135k_tiling_V2.ndf
 
Submission date Sep 12, 2011
Last update date Mar 02, 2012
Contact name Su-Hyun Park
E-mail(s) shpark8@gmail.com
Organization name Myongji University
Street address 38-2 Nam-dong
City Yongin
ZIP/Postal code 449-728
Country South Korea
 
Samples (61) GSM795167, GSM795168, GSM795169, GSM795170, GSM795171, GSM795172 
Series (5)
GSE32065 Expression analysis of both total and polysomal mRNAs under drought, salt and cold stress conditions
GSE41204 Expression analysis of CaMsrB2-transformed rice (Oryza sativa L. cv. ILMI) without/with Bar selection marker under drought stress conditions
GSE100598 Transcriptome analysis of early submergence-responsive genes in deepwater rice

Data table header descriptions
ID SEQ_ID; 27,488 Rice Gene Name : IRGSP, RAP2 database (http://rapdb.lab.nig.ac.jp)
ORF ORF Name
GB_ACC GenBank Accession number
SPOT_ID spot id

Data table
ID ORF GB_ACC SPOT_ID
Os03g0388900 Os03g0388900
Os09g0502900 Os09g0502900
Os08g0511900 Os08g0511900
Os05g0457200 Os05g0457200
Os04g0643200 Os04g0643200
Os12g0221400 Os12g0221400
Os04g0499300 Os04g0499300
Os11g0592400 Os11g0592400
Os06g0186500 Os06g0186500
Os02g0503100 Os02g0503100
Os05g0130100 Os05g0130100
Os02g0187100 Os02g0187100
Os05g0196100 Os05g0196100
Os01g0628700 Os01g0628700
Os05g0490800 Os05g0490800
Os04g0137500 Os04g0137500
Os01g0195400 Os01g0195400
Os06g0141000 Os06g0141000
Os03g0805600 Os03g0805600
Os06g0259000 Os06g0259000

Total number of rows: 31588

Table truncated, full table size 846 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL14568_Rice_135k_tiling_V2.ndf.gz 6.0 Mb (ftp)(http) NDF

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