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Platform GPL13972 Query DataSets for GPL13972
Status Public on Aug 09, 2011
Title Agilent-031697 Yeast 8x60k Tiling Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae S288C
Manufacturer Agilent
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number 031697
Support glass
Coating unknown
 
 
Web link http://www.agilent.com
Contributor(s) Gogol MM
Submission date Jul 26, 2011
Last update date Feb 02, 2021
Contact name Madelaine Gogol
Organization name Stowers Institute
Department Computational Biology Core
Street address 1000 E. 50th Street
City Kansas City
State/province MO
ZIP/Postal code 64110
Country USA
 
Samples (131) GSM775491, GSM775492, GSM775493, GSM794533, GSM794534, GSM794535 
Series (10)
GSE31301 Localization of Isw1-3xFLAG in wild-type yeast.
GSE32042 Isw1 and Chd1 maintain chromatin organization during transcription
GSE32043 Histone exchange in wildtype, isw1, chd1, isw1 chd1 and ioc4 yeast strains
Relations
Alternative to GPL29687 (probe name version)

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location sacCer1
DESCRIPTION Description
SEQUENCE
ORF
RANGE_GB GenBank accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE ORF RANGE_GB RANGE_START RANGE_END
1 192 328 --ScCGHBrightCorner pos
2 192 326 --DarkCorner pos
3 192 324 --DarkCorner pos
4 192 322 A_75_P01151936.msm_swv FALSE MSH5 MSH5|sgd|YDL154W|sgd|MSH5:1470 chr4:000179775-000179834 INSIDE ATTCCCCAATTAGGATACTTAGTAACCATTAGCGTCTTAATGGAACCTTTATTGGATGGC MSH5 NC_001136.4 179775 179834
5 192 320 A_75_P01110016.msm_swv FALSE RNQ1 RNQ1|sgd|YCL028W|sgd|RNQ1:1019 chr3:000071144-000071192 INSIDE CAAGTTCCTACCTGGGCAATAACTCCAATTCAAATTCGAGTTATGGGGG RNQ1 NC_001135.2 71144 71192
6 192 318 A_75_P01126597.msm_swv FALSE CPR4 CPR4|sgd|YCR069W|sgd|CPR4:605 chr3:000239622-000239681 INSIDE AACTTCTGGTCTAGATCAACTAATGGATGCTATTCAATACACAGAAACAGACGAATATGG CPR4 NC_001135.2 239622 239681
7 192 316 A_75_P01941860.msm_swv FALSE SRP1 SRP1|sgd|YNL189W|sgd|SRP1:1188 chr14:000285414-000285473 INSIDE CCATTAGTTAAACTTTTGGAAGTTGCAGAATATAAAACTAAAAAAGAAGCTTGTTGGGCT SRP1 NC_001146.1 285414 285473
8 192 314 A_75_P01452111.msm_swv FALSE PUS6 PUS6|sgd|YGR169C|sgd|PUS6:356 chr7:000835520-000835578 INSIDE AGGATACTCTCATCTTCAAAAACAATATTGAATCCCGCTATTCTGCCAGGTAAATCCTC PUS6 NC_001139.3 835520 835578
9 192 312 A_75_P01625011.msm_swv FALSE RAV1 RAV1|sgd|YJR033C|sgd|RAV1:3140 chr10:000492976-000493035 INSIDE AAATCCATATCATGCACTTGCTTGCAAAGAACGTTGACACAATCTTTTAGAGAGTCAGTT RAV1 NC_001142.4 492976 493035
10 192 310 A_75_P01088330.msm_swv FALSE YBR219C YBR219C|sgd|YBR219C|sgd|YBR219C:-982|sgd|YBR220C:392 chr2:000664211-000664269 PROMOTER AACCACCACGTCAAATTTTTTATACTGACACTGTGTAAAGTGCCATTACCGCGATTATG YBR219C NC_001134.4 664211 664269
11 192 308 A_75_P01788859.msm_swv FALSE STT4 STT4|sgd|YLR305C|sgd|STT4:3127 chr12:000740707-000740766 INSIDE GCCTTTTGATATCCTCTGGTGATGATGTAATAGCGGTATCGAAAAGATATTTTGACCTCC STT4 NC_001144.2 740707 740766
12 192 306 A_75_P01277458.msm_swv FALSE SEC20-LCD1 SEC20-LCD1|sgd|YDR498C|sgd|YDR499W|sgd|SEC20:-200|sgd|LCD1:-635|sgd|YDR497C:-1727 chr4:001447153-001447212 DIVERGENT_PROMOTER AAAGTCACTGGTAAAGACGTGCTTTCTTTAGTGTGGGATTAGATTTACCACTTGTTTTGA SEC20-LCD1 NC_001136.4 1447153 1447212
13 192 304 A_75_P01460934.msm_swv FALSE CCH1 CCH1|sgd|YGR217W|sgd|CCH1:395 chr7:000925061-000925120 INSIDE ACCCTCTACAAAATCTGCCAAGTCTAGTTCGCAGTATATTGATTTAAATGATGAAAGGCT CCH1 NC_001139.3 925061 925120
14 192 302 A_75_P01595340.msm_swv FALSE NCA3 NCA3|sgd|YJL116C|sgd|NCA3:388 chr10:000194157-000194213 INSIDE AGTCTTTGACATTCCAGGTTCACATGCATAAGAACAGTAGTAGCCATCCTTACATTC NCA3 NC_001142.4 194157 194213
15 192 300 A_75_P01390447.msm_swv FALSE AMS1 AMS1|sgd|YGL156W|sgd|AMS1:1813 chr7:000212202-000212261 INSIDE CTGCCAAAACATCAGTTTTATATCCCGATTCGTATAAATACCCTTCCAAACAGATTAACG AMS1 NC_001139.3 212202 212261
16 192 298 A_75_P01848510.msm_swv FALSE YML002W YML002W|sgd|YML002W|sgd|YML002W:1455 chr13:000265966-000266025 INSIDE AAAAAAATTCCAGAAAATTTGTTCACTGATGAGGCTTCTATCTTATATTGGATGCGCATA YML002W NC_001145.1 265966 266025
17 192 296 A_75_P01457039.msm_swv FALSE PDX1 PDX1|sgd|YGR193C|sgd|PDX1:536 chr7:000885178-000885237 INSIDE AAAGCCTTTTGTTTGGATATATTGTTCTCAGCCAGTAGTAATGACACGGATGGTAATAGC PDX1 NC_001139.3 885178 885237
18 192 294 A_75_P01053611.msm_swv FALSE CHS2 CHS2|sgd|YBR038W|sgd|CHS2:721 chr2:000312549-000312604 INSIDE AAGAAGAAGGCACTATTGAAACTAGACAACCCGATACCAAAAGGTCTGTTGGATAC CHS2 NC_001134.4 312549 312604
19 192 292 A_75_P01469319.msm_swv FALSE RAD2 RAD2|sgd|YGR258C|sgd|RAD2:1015 chr7:001009726-001009785 INSIDE CGTTAGAAGACTCATGTCGCACTATTTTTAAGGAATTATCTTCCAAATCATCCCATCGGA RAD2 NC_001139.3 1009726 1009785
20 192 290 A_75_P01959138.msm_swv FALSE TOP2 TOP2|sgd|YNL088W|sgd|TOP2:2163 chr14:000459834-000459893 INSIDE AAAAAAAATTTAAAGTCGGAACTGAAAGTAGCTCAACTTGCACCATACGTGAGCGAATGT TOP2 NC_001146.1 459834 459893

Total number of rows: 62976

Table truncated, full table size 12804 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL13972_sequences.txt.gz 1.4 Mb (ftp)(http) TXT

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