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Platform GPL138 Query DataSets for GPL138
Status Public on Oct 01, 2002
Title Atlas Human Neurobiology Array (Cat. #7736-1)
Technology type spotted DNA/cDNA
Distribution commercial
Organism Homo sapiens
Manufacturer BD Biosciences Clontech
Manufacture protocol see manufacturer's web site
 
Description Nylon, human cDNA array designed to study neurobiology. The cDNA fragments (200-600 bp) are PCR-amplified using gene-specific primers, and are selected so that they lack repetitive elements and have minimal homology with other genes on the array.
 
Web link http://www.clontech.com/atlas/index.shtml
Submission date Apr 24, 2002
Last update date Apr 09, 2008
Organization BD Biosciences Clontech
E-mail(s) tech@clontech.com
Phone 877-232-8995
URL http://www.clontech.com
Street address 1020 East Meadow Circle
City Palo Alto
State/province CA
ZIP/Postal code 94303-4230
Country USA
 

Data table header descriptions
ID unique reference number used by BD Biosciences Clontech to identify each gene in collection
GENE_NAME set of names commonly used for the gene, based on the current literature
COORDINATE array coordinate
GB_LIST GenBank accession number
SP_LIST SwissProt accession number
GENE Entrez GENE ID
DESC description
CLASSIFICATION set of functional classifications for the gene

Data table
ID GENE_NAME COORDINATE GB_LIST SP_LIST GENE DESC CLASSIFICATION
N476 transcription factor BF-1; brain factor 1 (HBF-1); HFK1 + transcription factor BF-2; brain factor 2 (HBF-2); HFK2 A1a X74142, X78202 P55315 2290 forkhead box G1B FB02 SN00
369 brain-specific homeobox/POU domain protein 3A (brn-3A); RDC-1; octamer binding transcription factor 1 (OTF1) A1b L20433 Q01851, Q15318, Q14986 5457 POU domain, class 4, transcription factor 1 FB03 SN00
N461 brain-specific homeobox/POU domain protein 3B (brn-3B) A1c U06233 Q12837, Q13883, Q14987 5458 POU domain, class 4, transcription factor 2 FB02 SN00
N462 brain-specific homeobox/POU domain protein 3C (brn-3C) A1d U10061 Q15319 5459 POU domain, class 4, transcription factor 3 FB02 SN00
N371 brain-specific homeobox/POU domain protein 1 (brn-1) A1e AB001835 P20264, P78379 5455 POU domain, class 3, transcription factor 3 FB02 SN00
B179 octamer-binding transcription factor 7 (OCT7); nervous-system specific OCT3 (N-OCT3); N-OCT5A; N-OCT5B; POU domain class 3 transcription factor 2 (POU3F2); brain-specific homeobox/POU domain protein 2 (BRN2) A1f Z11933 Q14960, P20265 5454 POU domain, class 3, transcription factor 2 FB02 SN00
N362 brain-specific homeobox/POU domain protein 5 (brn-5) A1g Z21966 Q14863 5463 POU domain, class 6, transcription factor 1 FB02 SN00
N227 T-brain-1 protein (Tbr-1); T-box brain protein 1; Tes-56 A1h U49250 Q16650 10716 T-box, brain, 1 FB03 SN00
88 DNA-binding protein SMBP-2; glial factor-1 (GF-1) A1i L14754 P38935 3508 immunoglobulin mu binding protein 2 FB02 SN00
B164 major vault protein (MVP); lung resistance-related protein (LRP) A1j X79882 Q14764 9961 major vault protein FH02 SC00
N030 nuclear receptor subfamily 4 group A member 3 (NR4A3); neuron-derived orphan receptor 1 (NOR1); mitogen-induced nuclear orphan receptor (MINOR); CHN A1k D78579 Q92570, Q12935, Q16420 8013 nuclear receptor subfamily 4, group A, member 3 FR03 FV05 FB03 SN00
421 activating transcription factor 2 (ATF2); cAMP response element DNA-binding protein 1 (CREBP1); HB16 A1l M31630 P15336 activating transcription factor 2 (ATF2); cAMP response element DNA-binding protein 1 (CREBP1); HB16 FB03 FT00 SN00
153 c-jun proto-oncogene A1m J04111 P05412 3725 v-jun avian sarcoma virus 17 oncogene homolog FG00 FB03 FT00 SN00
345 achaete-scute homolog 1 (ASH1) A1n L08424 P50553 429 achaete-scute complex (Drosophila) homolog-like 1 FB03 SN00
S72 tumor rejection antigen 1 (TRA1); GP96 homolog; 94-kDa glucose-regulated protein (GRP94); endoplasmin A2a X15187, M33716 P14625 7184 tumor rejection antigen (gp96) 1 FH01 FM01 SE00
N467 ER lumen protein retaining receptor 1; KDEL receptor 1; ERD 21 A2b X55885 P24390 10945 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 FK05 SE00
N470 ER lumen protein retaining receptor 2; KDEL receptor 2; ERD 22 A2c X63745 P33947 11014 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 FK05 SE00
N302 ER-Golgi intermediate compartment 53-kDa protein (ERGIC-53); GP58; MR60; mannose-binding lectin (LMAN1) A2d X71661 P49257 3998 lectin, mannose-binding, 1 FK05 SG00 SE00
S39 FK506-binding protein 13 (FKBP13); FKBP2; peptidyl-prolyl cis-trans isomerase (PPIase) A2e M65128 P26885 2286 FK506-binding protein 2 (13kD) FE03 FM02 SE00
N087 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase; HMGCR) A2f M11058 P04035 3156 3-hydroxy-3-methylglutaryl-Coenzyme A reductase FL05 SE00

Total number of rows: 597

Table truncated, full table size 91 Kbytes.




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