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Platform GPL13772 Query DataSets for GPL13772
Status Public on Mar 15, 2012
Title Heterobasidion annosum 12K whole genome expression array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Heterobasidion annosum
Manufacturer Roche-NimbleGen
Manufacture protocol Propriety in situ oligonucleotide synthesis
Support unknown
Coating unknown
 
 
Contributor(s) Kohler A, Tisserant E, Olson Å, Stenlid J, Martin F
Submission date Jun 27, 2011
Last update date Mar 15, 2012
Contact name Annegret Kohler
E-mail(s) annegret.kohler@inrae.fr
Phone +33 (0)383 394072
Organization name INRAE
Department UMR 1136
Lab Interactions Arbres/Micro-organismes
Street address Centre INRAE Grand Est Nancy
City Champenoux
ZIP/Postal code 54280
Country France
 
Samples (72) GSM748496, GSM748497, GSM748498, GSM748499, GSM748500, GSM748501 
Series (4)
GSE30230 Heterobasidion irregulare gene expression from different tissues and mycelium grown on different substrates
GSE39805 Heterobasidion annosum gene expression from different tissues and mycelium grown on different substrates and under different biotic and abiotic stresses
GSE41301 Heterobasidion annosum gene expression from mycelium grown on different substrates

Data table header descriptions
ID
SEQ_ID Accession assigned by NimbleGen to gene
PROBE_PAIRS Number of probes per sequence
GENE_EXPR_OPTION Replicate number
GENE_INFO Accession name obtained from the JGI Heterobasidion annosum genome sequence version 1.0
blastx vs nr Best Hit BlastX nr NCBI
e-value E value of highest scoring Blast return
score Score of highest scoring Blast return
SPOT_ID

Data table
ID SEQ_ID PROBE_PAIRS GENE_EXPR_OPTION GENE_INFO blastx vs nr e-value score SPOT_ID
1 8989 5 BLOCK1 jgi|Hetan1|8989|gw1.18.1.1 predicted protein [Laccaria bicolor S238N-H82] 0 1137 JGI: Hetan1|8989|gw1.18.1.1
2 9148 5 BLOCK1 jgi|Hetan1|9148|gw1.3.23.1 CnHHK2 [Cryptococcus neoformans var. neoformans] 0 838 JGI: Hetan1|9148|gw1.3.23.1
3 9152 5 BLOCK1 jgi|Hetan1|9152|gw1.9.16.1 acetyl-/propionyl-coenzyme A carboxylase alpha chain [Paracoccidioides brasiliensis Pb18] 0 709 JGI: Hetan1|9152|gw1.9.16.1
4 9161 5 BLOCK1 jgi|Hetan1|9161|gw1.7.16.1 predicted protein [Laccaria bicolor S238N-H82] 0 1451 JGI: Hetan1|9161|gw1.7.16.1
5 9463 5 BLOCK1 jgi|Hetan1|9463|gw1.1.83.1 SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82] 0 1357 JGI: Hetan1|9463|gw1.1.83.1
6 9528 5 BLOCK1 jgi|Hetan1|9528|gw1.1.90.1 hypothetical protein CC1G_06538 [Coprinopsis cinerea okayama7#130] 0 847 JGI: Hetan1|9528|gw1.1.90.1
7 9532 5 BLOCK1 jgi|Hetan1|9532|gw1.6.44.1 predicted protein [Postia placenta Mad-698-R] 0 696 JGI: Hetan1|9532|gw1.6.44.1
8 9713 5 BLOCK1 jgi|Hetan1|9713|gw1.17.8.1 predicted protein [Laccaria bicolor S238N-H82] 0 649 JGI: Hetan1|9713|gw1.17.8.1
9 9760 5 BLOCK1 jgi|Hetan1|9760|gw1.10.37.1 hypothetical protein CC1G_05451 [Coprinopsis cinerea okayama7#130] 0 728 JGI: Hetan1|9760|gw1.10.37.1
10 10094 5 BLOCK1 jgi|Hetan1|10094|gw1.3.107.1 hypothetical protein CC1G_07388 [Coprinopsis cinerea okayama7#130] 0 675 JGI: Hetan1|10094|gw1.3.107.1
11 10142 5 BLOCK1 jgi|Hetan1|10142|gw1.1.195.1 hypothetical protein An01g01920 [Aspergillus niger] e-125 453 JGI: Hetan1|10142|gw1.1.195.1
12 10160 5 BLOCK1 jgi|Hetan1|10160|gw1.12.56.1 predicted protein [Laccaria bicolor S238N-H82] e-160 569 JGI: Hetan1|10160|gw1.12.56.1
13 10330 5 BLOCK1 jgi|Hetan1|10330|gw1.5.70.1 predicted protein [Postia placenta Mad-698-R] 0 795 JGI: Hetan1|10330|gw1.5.70.1
14 10459 5 BLOCK1 jgi|Hetan1|10459|gw1.1.238.1 predicted protein [Laccaria bicolor S238N-H82] e-154 547 JGI: Hetan1|10459|gw1.1.238.1
15 10721 5 BLOCK1 jgi|Hetan1|10721|gw1.2.193.1 predicted protein [Postia placenta Mad-698-R] e-101 373 JGI: Hetan1|10721|gw1.2.193.1
16 10772 5 BLOCK1 jgi|Hetan1|10772|gw1.11.96.1 hypothetical protein CC1G_06280 [Coprinopsis cinerea okayama7#130] 0 711 JGI: Hetan1|10772|gw1.11.96.1
17 10776 5 BLOCK1 jgi|Hetan1|10776|gw1.8.112.1 predicted protein [Postia placenta Mad-698-R] e-146 522 JGI: Hetan1|10776|gw1.8.112.1
18 10835 5 BLOCK1 jgi|Hetan1|10835|gw1.4.223.1 predicted protein [Postia placenta Mad-698-R] e-130 468 JGI: Hetan1|10835|gw1.4.223.1
19 11056 5 BLOCK1 jgi|Hetan1|11056|gw1.8.131.1 unnamed protein product [Podospora anserina] e-105 387 JGI: Hetan1|11056|gw1.8.131.1
20 11155 5 BLOCK1 jgi|Hetan1|11155|gw1.2.246.1 predicted protein [Laccaria bicolor S238N-H82] e-135 486 JGI: Hetan1|11155|gw1.2.246.1

Total number of rows: 12199

Table truncated, full table size 1853 Kbytes.




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Supplementary file Size Download File type/resource
GPL13772_090716_Hann_AK_EXP.ndf.gz 4.2 Mb (ftp)(http) NDF
GPL13772_090716_Hann_AK_EXP.ngd.gz 126.0 Kb (ftp)(http) NGD

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