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Platform GPL13432 Query DataSets for GPL13432
Status Public on Apr 21, 2011
Title LMEUC_Efae_26K_v1
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Enterococcus faecalis V583
Manufacturer Febit biomed GmbH Company (Heidelberg, Germany)
Manufacture protocol in situ oligonucleotides, E. faecalis V583 custom-made tiling array of the intergenic regions (50 nucleotides probes length with an15 nucleotides overlap) for both strands. Synthesis performed by Geniom Microarray Facility (Febit biomed GmbH, Heidelberg, Germany)
 
 
Submission date Apr 20, 2011
Last update date Aug 10, 2011
Contact name jean-christophe giard
E-mail(s) jean-christophe.giard@unicaen.fr
Phone 33 231 565 410
Fax 33 231 565 311
Organization name Université de Caen
Lab LME
Street address esplanade de la paix
City Caen
ZIP/Postal code 14032
Country France
 
Samples (2) GSM712074, GSM712075
Series (1)
GSE28741 sncRNAs in E. faecalis V538

Data table header descriptions
ID
RANGE_GB
RANGE_START
RANGE_END
SEQUENCE

Data table
ID RANGE_GB RANGE_START RANGE_END SEQUENCE
igf_efv583_EF0757_EF0758_1_713486_713535_f NC_004668.1 713486 713535 AATCATCGCTTGTCTTTGTGTTTAAGTCTTTACAAAACCACCCAAGTGTT
igf_efv583_EF2837_EF2838_2_2727583_2727632_f NC_004668.1 2727583 2727632 GCTTTAAAATGCGTTTTAATCCGTTTTTCTTTCTTTGTATCTATTTATAT
igf_efv583_EF3170_EF3171_6_3044250_3044299_f NC_004668.1 3044250 3044299 TATTAGACAACGTCACATTTTTAGGTTTCCGCCGTCACGAATTGTTTAAA
igf_efv583_EF2025_EF2027_3_1953541_1953590_f NC_004668.1 1953541 1953590 TCTATCTGAGATGAAAATGTATCTATAACTAGCTAGCGGAAACTAGTTAG
igf_efv583pTEF1_EFA0021_EFA0022_1_16586_16635_f NC_004668.1 16586 16635 AACGTTTCCTCATTTCTTGTAAGCTTCCCCTCTTAAAATTTAAGATGGGA
igf_efv583_EF1861_EF1863_10_1807475_1807524_f NC_004668.1 1807475 1807524 TTTCAGGATCATTTAGAGCGAGCGATTAATTCACTTCTACAAGCAGAGCT
igf_efv583_EF3093_EF3094_3_2968206_2968255_f NC_004668.1 2968206 2968255 AATAAACGGCGGGACAGGAGTAGCTTCTTCATTCTTGAAGCTAAATACTC
gf_efv583_EF0057_EF0057_1_57587_57636_f NC_004668.1 57587 57636 ATGGCAGAAATGCTTTCTTATGCATTTATGCAAAAGGCCTTTTTAGCAGC
igf_efv583_EF2728_EF2729_1_2640024_2640073_f NC_004668.1 2640024 2640073 TTTTTTTCATTCCTTTCTGCGATGAACTAAAAAAGGGCTTGGAAAAGAAG
igf_efv583pTEF1_EFA0010_EFA0012_18_9631_9680_f NC_004668.1 9631 9680 AAACGGCTCTTAAAACGCAAATATGAGCCAAATAAATAAATTTTAATTTT
igf_efv583_tRNAMet6_tRNAPseudo1_11_532567_532616_f NC_004668.1 532567 532616 TGCGTGTTAGCACTTGCTTCAATAAAGAATTAAGAATTACTATTATTATG
igf_efv583_EF2484_EF2485_7_2405827_2405876_f NC_004668.1 2405827 2405876 CTATCTTTTGCAGTTTTCTTTTCCTCATGTTATAAAGAGATAGTAGGAAG
igf_efv583_EF2673_EF2674_2_2585349_2585398_f NC_004668.1 2585349 2585398 CTTAAGAGTTAAAAAGTGGGATATAAGTCATCTGGACTTATATCCCACTT
igf_efv583_EF0519_EF0521_9_480321_480370_f NC_004668.1 480321 480370 GGACGTTGGCATTATCTTTATCGTGCAATTGATGCGGACGGCTTAACCTT
igf_efv583_EF1814_EF1815_5_1759614_1759663_f NC_004668.1 1759614 1759663 AACTATACACCAGAACCCCTTTAAATTGAACCGTAATAGATACGATTTAT
igf_efv583_EF2158_EF2159_6_2066548_2066597_f NC_004668.1 2066548 2066597 ATTACTTTATTTTGTGAAATAGAAATTATCTATTCATTCACAAACTAAAG
igf_efv583pTEF1_EFA0063_EFA0065_5_52850_52899_f NC_004668.1 52850 52899 CAAAAGTTACTTTTACAATTTGATTTACTCAGTGAAAGGTTTGTCGAAAA
gf_efv583_EF1523_EF1523_1_1479424_1479473_f NC_004668.1 1479424 1479473 ATGACAAAAAAATGTCCGAAGTGCGGGAACGAATTCGATGCAGAATTAAC
sigf_efv583_EF1472_EF1473_1_1430511_1430560_f NC_004668.1 1430511 1430560 TAATGGCAGATGCGTTACGTAGTTCAGTAATCGAACTCGATTGGAAAATA
gf_efv583_EF1531_EF1531_1_1487675_1487724_f NC_004668.1 1487675 1487724 ATGGTTAGAACGAAGGTATATACAAAGGAAAAAATCTTAAACGTAGCTGA

Total number of rows: 29667

Table truncated, full table size 3556 Kbytes.




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Supplementary data files not provided

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