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| Status |
Public on Apr 09, 2011 |
| Title |
A-UMCU-HS44K-1.0 |
| Technology type |
in situ oligonucleotide |
| Distribution |
non-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Holstege Lab, UMC Utrecht, The Netherlands |
| Manufacture protocol |
1. Slides are obtained from a commercial provider (Agilent) and reannotated using blat to obtain the latest gene annotations from ensembl.
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| Support |
glass |
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| Web link |
http://microarrays.holstegelab.nl
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| Contributor(s) |
van Leenen D, Groot Koerkamp M, Lijnzaad P, Bakker L, Sluiters E, van Hooff S, Kemmeren P, Holstege F |
| Submission date |
Apr 08, 2011 |
| Last update date |
Apr 09, 2011 |
| Contact name |
Patrick Kemmeren |
| Organization name |
UMC Utrecht
|
| Department |
Department of Molecular Cancer Research
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| Lab |
Holstege Lab
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| Street address |
Universiteitsweg 100
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| City |
Utrecht |
| State/province |
Utrecht |
| ZIP/Postal code |
3584 CG |
| Country |
Netherlands |
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| Samples (39)
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GSM1185262, GSM1185263, GSM1185264, GSM1185265, GSM1185266, GSM1185267
GSM1185268, GSM1185269, GSM1185270, GSM1185271, GSM1185272, GSM1185273, GSM1185274, GSM1185275, GSM1185276, GSM1185277, GSM1185278, GSM1185279, GSM1185280, GSM1185281, GSM1287873, GSM1287874, GSM1287875, GSM1287876, GSM1287877, GSM1287878, GSM1287879, GSM1287880, GSM1287881, GSM1287882, GSM1287883, GSM1287884, GSM1287885, GSM1287886, GSM1287887, GSM1287888, GSM1287889, GSM1287890, GSM1287891
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| Series (2) |
| GSE48823 |
RF003-V1: The expression of ERAP2 and LST1 distinguishes between Glucocorticoid-Responders and Non-Responders in Rheumatoid Arthritis |
| GSE53221 |
RF003-V3: Glucocorticoid-responsiveness correlates with an Interferon signature in Rheumatoid Arthritis Patients |
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| Data table header descriptions |
| ID |
primary identifier |
| METACOLUMN |
metagrid column position |
| METAROW |
metagrid row position |
| COLUMN |
grid column position |
| ROW |
grid row position |
| PROBE_ID |
alternative spot identifier |
| SUPPLIER_ID |
original supplier id, e.g. from agilent or operon |
| REPORTER_GROUP |
class the reporter belongs to, e.g. controls or genes |
| SEQUENCE |
nucleotide sequence |
| SYSTEMATIC_NAME |
systematic name of the gene |
| GENE_SYMBOL |
Gene symbol for the gene |
| ORF |
Gene symbol |
| SYNONYMS |
Synonyms for the gene, semicolon separated |
| ORGANISM |
organism |
| PRIMARY_DB |
primay external database identifier, format is <extdb>:<identifier> |
| SPOT_ID |
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| Data table |
| ID |
METACOLUMN |
METAROW |
COLUMN |
ROW |
PROBE_ID |
SUPPLIER_ID |
REPORTER_GROUP |
SEQUENCE |
SYSTEMATIC_NAME |
GENE_SYMBOL |
ORF |
SYNONYMS |
ORGANISM |
PRIMARY_DB |
SPOT_ID |
| 1 |
1 |
1 |
1 |
1 |
QCAA003595 |
GE_BrightCorner |
qc_control |
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CONTROL |
| 2 |
1 |
1 |
2 |
1 |
QCAA003595 |
GE_BrightCorner |
qc_control |
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CONTROL |
| 3 |
1 |
1 |
3 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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|
CONTROL |
| 4 |
1 |
1 |
4 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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CONTROL |
| 5 |
1 |
1 |
5 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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CONTROL |
| 6 |
1 |
1 |
6 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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CONTROL |
| 7 |
1 |
1 |
7 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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|
CONTROL |
| 8 |
1 |
1 |
8 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
|
CONTROL |
| 9 |
1 |
1 |
9 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
|
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|
|
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|
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CONTROL |
| 10 |
1 |
1 |
10 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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|
CONTROL |
| 11 |
1 |
1 |
11 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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|
|
|
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CONTROL |
| 12 |
1 |
1 |
12 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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CONTROL |
| 13 |
1 |
1 |
13 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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CONTROL |
| 14 |
1 |
1 |
14 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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CONTROL |
| 15 |
1 |
1 |
15 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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CONTROL |
| 16 |
1 |
1 |
16 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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CONTROL |
| 17 |
1 |
1 |
17 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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CONTROL |
| 18 |
1 |
1 |
18 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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CONTROL |
| 19 |
1 |
1 |
19 |
1 |
QCAA000454 |
DarkCorner |
qc_control |
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CONTROL |
| 20 |
1 |
1 |
20 |
1 |
HSAD006031 |
A_23_P385114 |
gene |
TGACATGGTATTTGGTTTTGGGTATCTGTTACTTTGGCACTATTCTTGTTTGCCTCTTTA |
ENSG00000205189 |
ZBTB10 |
ZBTB10 |
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Homo sapiens |
ensembl:ENSG00000205189 |
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Total number of rows: 45220
Table truncated, full table size 7421 Kbytes.
| Supplementary data files not provided |
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