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Platform GPL13335 Query DataSets for GPL13335
Status Public on Mar 31, 2013
Title Aedes aegypti whole genome array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Aedes aegypti
Manufacturer NimbleGen
Manufacture protocol High-density DNA array with X4 build. See manufacturer's website at http://www.nimblegen.com/.
 
Description ORF array of the aedes aegypti genome
native array description file: aaegypti_60mer_probes_rank4.filter
native array description file: OID14431.ngd
 
Submission date Mar 28, 2011
Last update date Mar 31, 2013
Contact name Tonya M Colpitts
E-mail(s) tonya.colpitts@yale.edu
Phone 203-737-5635
Fax 203-785-6815
Organization name Yale University School of Medicine
Department Internal Medicine, Section of Infectious Diseases
Lab Erol Fikrig
Street address 300 Cedar St, TAC S410
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Samples (37) GSM701558, GSM701559, GSM701560, GSM701561, GSM701562, GSM701563 
Series (1)
GSE28208 Analysis of the Aedes aegypti transcriptome during flavivirus infection

Data table header descriptions
ID
ORF
DESCRIPTION
SEQUENCE

Data table
ID ORF DESCRIPTION SEQUENCE
AAEL003012-RA AaeL_AAEL003012 supercont1.74|VectorBase|2258591|2261235|+|ID=AAEL003012-RA stable_id=AAEL003012-PA.1 Parent=AAEL003012 description=protease m1 zinc metalloprotease ec_number=3.4.11.2 Ontology_term=GO:0005488,GO:0008233,GO:0019538 Dbxref=protein_id:EAT45763 TGTGCGGGCCGGAAGGACGAATATAAGGTTTGAGTTATGTGCCCAGATAATGTCTCCAGA
AAEL009577-RA AaeL_AAEL009577 supercont1.409|VectorBase|1013733|1039958|-|ID=AAEL009577-RA stable_id=AAEL009577-PA.1 Parent=AAEL009577 description=conserved hypothetical protein Ontology_term=GO:0005198,GO:0005576,GO:0005975,GO:0030246 Dbxref=protein_id:EAT38549 TGAATGGCATCGAGCCACGCCAGGGACAGTGTGACGCTGGACTTGTCTACAATGAAGACA
AAEL001704-RA AaeL_AAEL001704 supercont1.39|VectorBase|666749|667183|-|ID=AAEL001704-RA stable_id=AAEL001704-PA.1 Parent=AAEL001704 description=conserved hypothetical protein Dbxref=protein_id:EAT47171 TCAAGCATACCGTAGTGTCTACCCCAATTGTCAAGACTTCCTACCATGCCATCCCATCCT
AAEL001022-RB AaeL_AAEL001022 supercont1.21|VectorBase|2629046|2646673|-|ID=AAEL001022-RB stable_id=AAEL001022-PB.1 Parent=AAEL001022 description=anterior fat body protein Ontology_term=GO:0005509,GO:0006118,GO:0007165,GO:0007275 Dbxref=protein_id:EAT47888 TATTTGTAGCTACCGCTCATACGGACACTCAGGATCCACCGGCTGGAGCACTATTCAAAG
AAEL011045-RA AaeL_AAEL011045 supercont1.536|VectorBase|554470|560095|-|ID=AAEL011045-RA stable_id=AAEL011045-PA.1 Parent=AAEL011045 description=pupal cuticle protein, putative Ontology_term=GO:0042302 Dbxref=protein_id:EAT36916 TACACCGCCGATGATGTTAACGGATTCAACGCTGTCGTCACCAAATCTGGCCCATCGGTA
AAEL003881-RA AaeL_AAEL003881 supercont1.99|VectorBase|645952|646429|-|ID=AAEL003881-RA stable_id=AAEL003881-PA.1 Parent=AAEL003881 description=anopheles stephensi ubiquitin, putative Ontology_term=GO:0006464 Dbxref=protein_id:EAT44777 AACATCATCAACCGGTCCACGTTGCATCTGGTGCTACGTTTGAGAGGTGGCCAGGCCTGA
AAEL011375-RA AaeL_AAEL011375 supercont1.573|VectorBase|518863|521192|-|ID=AAEL011375-RA stable_id=AAEL011375-PA.1 Parent=AAEL011375 description=trypsin, putative ec_number=3.4.21.4 Ontology_term=GO:0004252,GO:0006508 Dbxref=protein_id:EAT36554 AGGGCTGACTGCTGTTCTCCTACAGCCTCACAAGCTGCCTATTCAGGTGAGTCTGAAATG
AAEL010183-RA AaeL_AAEL010183 supercont1.458|VectorBase|667785|672394|-|ID=AAEL010183-RA stable_id=AAEL010183-PA.1 Parent=AAEL010183 description=conserved hypothetical protein Dbxref=protein_id:EAT37889 TAATGAACCGTTTATACGATATATGAATGCAATAGAGCTCAAATCTGCATTGGCAAAACT
AAEL006568-RA AaeL_AAEL006568 supercont1.211|VectorBase|742487|743767|-|ID=AAEL006568-RA stable_id=AAEL006568-PA.1 Parent=AAEL006568 description=serine protease ec_number=3.4.21.4 Ontology_term=GO:0006519,GO:0008233,GO:0009058,GO:0019538,GO:0030234,GO:0050789 Dbxref=protein_id:EAT41822 TGAAGTTCCAGGCGTGGATTTGGGGACCTGCCGTGAATCGTATCCACAGCTGTTGGATTC
AAEL002181-RA AaeL_AAEL002181 supercont1.51|VectorBase|1124252|1127983|-|ID=AAEL002181-RA stable_id=AAEL002181-PA.1 Parent=AAEL002181 description=cuticle protein, putative Dbxref=protein_id:EAT46600 TGCTGGAGTCGTTCCAGGAGCCACCTCTGTTACCGCTACCCGAGGTGCCGTCCATGTTGC
AAEL010164-RA AaeL_AAEL010164 supercont1.458|VectorBase|684495|685267|-|ID=AAEL010164-RA stable_id=AAEL010164-PA.1 Parent=AAEL010164 description=conserved hypothetical protein Dbxref=protein_id:EAT37890 TGGTGAATTTACAGAAACTCTTAAGTAACGTCAGTCACACTATCCAGGTCGACAATGCTA
AAEL009750-RA AaeL_AAEL009750 supercont1.424|VectorBase|524367|525647|+|ID=AAEL009750-RA stable_id=AAEL009750-PA.1 Parent=AAEL009750 description=hypothetical protein Dbxref=protein_id:EAT38353 TGGACTACATGACGAGCATTTTGATCGGACTTACCCAGGAAATGAAGCGGGTCATCGATG
AAEL014978-RA AaeL_AAEL014978 supercont1.1376|VectorBase|86494|96883|+|ID=AAEL014978-RA stable_id=AAEL014978-PA.1 Parent=AAEL014978 description=adult cuticle protein, putative Ontology_term=GO:0042302 Dbxref=protein_id:EAT32791 TGCCGTCAACAATGGCTACGGTCATCTGGGTAACTACGCCGGAGCCTATGCCACCGGAGA
AAEL010965-RA AaeL_AAEL010965 supercont1.527|VectorBase|280860|326438|-|ID=AAEL010965-RA stable_id=AAEL010965-PA.1 Parent=AAEL010965 description=cubulin ec_number=3.4.24.19 Ontology_term=GO:0004872,GO:0005102,GO:0007165,GO:0007267,GO:0007275,GO:0008233 Dbxref=protein_id:EAT36984 GGAGAGCACGTTTCCACTATGATTGATGCTTCGTATGTGGCCACGGACCAAGGACGGGGA
AAEL004935-RA AaeL_AAEL004935 supercont1.135|VectorBase|2072704|2077495|+|ID=AAEL004935-RA stable_id=AAEL004935-PA.1 Parent=AAEL004935 description=nicotinic acetylcholine receptor, beta-2 subunit, putative ec_number=1.14.99.3 Ontology_term=GO:0005230,GO:0006810,GO:0016020 Dbxref=protein_id:EAT43659 TCCACTTAAATACACTTCGCGATTTGGCACATATGAGTTACACGTTCTATCCTATAAGGA
AAEL008066-RA AaeL_AAEL008066 supercont1.299|VectorBase|719952|720416|-|ID=AAEL008066-RA stable_id=AAEL008066-PA.1 Parent=AAEL008066 description=trkB protein, putative Dbxref=protein_id:EAT40192 TGTTGAAGAAGAAAATGTACAGGAAGCTGAGGAAACACACGAGGAAGAAGAAGAGGATGA
AAEL010174-RA AaeL_AAEL010174 supercont1.458|VectorBase|719638|720372|+|ID=AAEL010174-RA stable_id=AAEL010174-PA.1 Parent=AAEL010174 description=conserved hypothetical protein Dbxref=protein_id:EAT37893 CGAAGGAATTTATCGCCGCGTATGACACCATTGTGTTGCATAAAGAGCTATACCGAAATG
AAEL006103-RA AaeL_AAEL006103 supercont1.189|VectorBase|2037030|2054778|-|ID=AAEL006103-RA stable_id=AAEL006103-PA.1 Parent=AAEL006103 description=conserved hypothetical protein Dbxref=protein_id:EAT42360 TTCCTACTGCCTGTGGAGACATTTCACGCTGGCTTGTCCAGAGGAGCTGCAAGACGATTC
AAEL007281-RA AaeL_AAEL007281 supercont1.247|VectorBase|860106|932863|-|ID=AAEL007281-RA stable_id=AAEL007281-PA.1 Parent=AAEL007281 description=stretchin-mlck Ontology_term=GO:0000166,GO:0003677,GO:0004672,GO:0004872,GO:0005198,GO:0006464,GO:0007049,GO:0007275,GO:0007582,GO:0009653 Dbxref=protein_id:EAT41026 GAAGGATGCAGATATAGAAGATAGTGTCACTGAGGTCAAGAGGACCGGTAAAGGCAGAGT
AAEL011460-RA AaeL_AAEL011460 supercont1.581|VectorBase|134739|136073|+|ID=AAEL011460-RA stable_id=AAEL011460-PA.1 Parent=AAEL011460 description=conserved hypothetical protein Ontology_term=GO:0005215,GO:0005488,GO:0005622,GO:0006810,GO:0008152,GO:0019538 Dbxref=protein_id:EAT36457 CTTTCTCACTGCGAAGCTACGCGAGAGAATAATGTGTCATGCTACGGTTTTAGAAGCAAA

Total number of rows: 15959

Table truncated, full table size 4800 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13335_OID14431.ngd.gz 631.5 Kb (ftp)(http) NGD
GPL13335_aaegypti_60mer_probes_rank4.filter.txt.gz 2.2 Mb (ftp)(http) TXT

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