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Platform GPL11244 Query DataSets for GPL11244
Status Public on Jan 07, 2011
Title NCI_GREWAL_Spombe_C10_v1
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Schizosaccharomyces pombe
Manufacturer Agilent
Manufacture protocol Agilent custom array preparation protocol
 
 
Contributor(s) Bowen C, Grewal S
Submission date Nov 23, 2010
Last update date Jan 07, 2011
Contact name Shiv Grewal
Phone 2407607553
Organization name NCI
Department LBMB
Lab Shiv Grewal
Street address NCI bldg 37 Rm 6068 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (15) GSM629266, GSM629267, GSM629268, GSM629269, GSM1103380, GSM1103381 
Series (3)
GSE25600 Asf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci (MNase)
GSE25605 Asf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci
GSE45378 HDAC mediated suppression of histone turnover promotes epigenetic stability of heterochromatin

Data table header descriptions
ID
IndexNum Index according to internal records
accessions Sanger Accession Numbers (where available)
ProbeName Probe Name, that also contains used genomic location
GeneName Gene Name
ORF
RANGE_START
RANGE_START
RANGE_END
SystematicName Systematic name
Description Brief description of the gene where available
SEQUENCE
SPOT_ID

Data table
ID IndexNum accessions ProbeName GeneName ORF RANGE_START RANGE_START RANGE_END SystematicName Description SEQUENCE SPOT_ID
1 100154 DarkCorner DarkCorner DarkCorner CONTROL
2 100155 DarkCorner DarkCorner DarkCorner CONTROL
3 100156 DarkCorner DarkCorner DarkCorner CONTROL
4 100157 DarkCorner DarkCorner DarkCorner CONTROL
5 100158 DarkCorner DarkCorner DarkCorner CONTROL
6 100159 DarkCorner DarkCorner DarkCorner CONTROL
7 100160 DarkCorner DarkCorner DarkCorner CONTROL
8 100161 DarkCorner DarkCorner DarkCorner CONTROL
9 100162 DarkCorner DarkCorner DarkCorner CONTROL
10 100163 DarkCorner DarkCorner DarkCorner CONTROL
11 100164 DarkCorner DarkCorner DarkCorner CONTROL
12 1876 GeneDB_Spombe|SPBC23G7.10c 1876_sC10B SPBC23G7.10c SPBC23G7.10c chr4:8901-8960 CAWFf#SPBC23G7.10c$$$#NADH-dependent flavin oxidoreductase , chr 2#chr2:2120447-2120506 TGGGCAACCAATCTGTAGCCGTTACTCTATAAAACAAGGGCATACTATCTGGAATTGCTT
13 21785 21785_sC10B chr2_1558111_1558170_R CU329671.1 1558170 1558111 chr2:1558170-1558111 NNWRu#$$$#NA#chr2:1558170-1558111 AAGAATATCATGGTTTCCATTGATTTTGTCGGAAAAAAACAAGTACATTGTAATTGTTTA
14 32605 32605_sC10B chr2_1667361_1667420 CU329671.1 1667361 1667420 chr2:1667361-1667420 NNWFu#$$$#NA#chr2:1667361-1667420 CTTTGCATCGCTGTCTGTGGACAGCTTTGACATTGGCGTCGAAATTATAGTAAATATTTC
15 18223 GeneDB_Spombe|SPBC83.07 18223_sC10B jmj3 SPBC83.07 CU329671.1 1522550 1522491 chr2:1522550-1522491 CAWRu#SPBC83.07$$jmj3$#Lid2 complex subunit Jmj3, chr 2#chr2:1522550-1522491 ATCGCTTTGAATCTCGAAGTACTCTCCTTTCCGTCTCACCATTCGCTCTAACCATAAATC
16 4290 4290_sC10B mat_33041_33100 chr4:33041-33100 NNWFu#$$$#NA#NA TCCTCTGATTCTTCGTACATGGGTCAATTAATGTATAAGCAAAACCTCGGAAGAGTACAA
17 14477 14477_sC10B chr3_34981_35040 CU329672.1 34981 35040 chr3:34981-35040 NNWFu#$$$#NA#chr3:34981-35040 AAATTATAACATCGAGTCTAAGTCATGCTTGACAATGTTTTGTTTGTGTTGAAATTAATA
18 20728 20728_sC10B chr2_1547541_1547600 CU329671.1 1547541 1547600 chr2:1547541-1547600 NNWFu#$$$#NA#chr2:1547541-1547600 ATAACACTGATCGTTATGGGGTTGTTAGTTTACAGGAAACGTAAAATGTGTTTGGAATTC
19 41002 41002_sC10B misc_RNA CU329671.1 1751390 1751331 chr2:1751390-1751331 NAbRu#misc_RNA putative misc RNA, short region of DNA highly conserved with c2D10 ,chr2:1751334-1751389 +#chr2:1751390-1751331 ATAAATGAAATGATTTTCAAACAGCAGGAACCAATCTTTTGCTACAGATGTTTACCTAGA
20 2257 GeneDB_Spombe|SPBC23G7.12c 2257_sC10B rpt6 SPBC23G7.12c chr4:12770-12711 CSWRf#SPBC23G7.12c$$rpt6$let1#19S proteasome regulatory subunit Rpt6, chr 2#chr2:2124316-2124257 ATGGGAAAGAACAAAGTTCTAGTCAAAGTCCATCCTGAAGGCAAATATGTCGTTGATATT

Total number of rows: 45220

Table truncated, full table size 9778 Kbytes.




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