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GEO help: Mouse over screen elements for information. |
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Status |
Public on Sep 29, 2010 |
Title |
NimbleGen Mouse CGH 3x720K Whole-Genome Tiling Array (Build MM9) [080603_MM9_WG_CGH_HX3] |
Technology type |
in situ oligonucleotide |
Distribution |
commercial |
Organism |
Mus musculus |
Manufacturer |
Roche NimbleGen Inc. |
Manufacture protocol |
See www.nimblegen.com
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Catalog number |
05542081001 |
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Description |
Format: 3x720K Source: UCSC Build: NCBI37, MM9 Probe Length: 50-75mer Median Probe Spacing: 3537
NimbleGen description files linked below: 080603_MM9_WG_CGH_HX3.ndf 080603_MM9_WG_CGH_HX3.pos
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Submission date |
Sep 28, 2010 |
Last update date |
Jul 15, 2011 |
Contact name |
Markus Müschen |
E-mail(s) |
mmuschen@chla.usc.edu
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Phone |
+ 1 323 361 5592
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Fax |
+1 323 361 1516
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URL |
http://www.lymphocytes.de/
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Organization name |
University of Southern California
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Department |
Childrens Hospital Los Angeles
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Lab |
Müschen Lab
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Street address |
4650 Sunset Blvd
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City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90027 |
Country |
USA |
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Samples (50)
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GSM601419, GSM601420, GSM601421, GSM601422, GSM601423, GSM601424
GSM762948, GSM762949, GSM762950, GSM762951, GSM762952, GSM762953, GSM870145, GSM870146, GSM870147, GSM914223, GSM914224, GSM914225, GSM914226, GSM914227, GSM914228, GSM914229, GSM914230, GSM914231, GSM914232, GSM914233, GSM914234, GSM914235, GSM922002, GSM922003, GSM923147, GSM923148, GSM923149, GSM923150, GSM923151, GSM923152, GSM923153, GSM923154, GSM923155, GSM923156, GSM923157, GSM923158, GSM923159, GSM923160, GSM1479363, GSM1479364, GSM1479365, GSM1479366, GSM1479367, GSM1479368
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Series (8)
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GSE24400 |
Comparison of copy number variations between wildtype and BCL6 knockout BCR-ABL1-driven acute lymphoblastic leukemia |
GSE30749 |
CGH analysis of haploid ES cells |
GSE30879 |
Expression and CGH analysis of haploid ES cells |
GSE35523 |
Array CGH from mouse SFME cells and SFME cells differentiated with TGFB and FCS |
GSE37233 |
DNA copy number analysis from mice with radiation-induced acute myeloid leukemia |
GSE37607 |
Spontaneous Nf1 deletion and recurrent copy number alterations in mammary tumorigenesis |
GSE53248 |
The G-protein Alpha Subunit Gsα Is A Tumor Suppressor In Sonic Hedgehog-driven Medulloblastoma |
GSE60416 |
The G-protein Alpha Subunit Gsα Is A Tumor Suppressor In Sonic Hedgehog-driven Medulloblastoma [Copy number analysis] |
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Data table header descriptions |
ID |
PROBE_ID (NimbleGen probe identifier) from .pos file |
SEQ_ID |
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CHROMOSOME |
Chromosome number |
RANGE_GB |
Chromosome ACCESSION.VERSION |
SPOT_ID |
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RANGE_START |
POSITION. Probe start position |
PROBE_COUNT |
The uniqueness count of the probe in the target genome |
LENGTH |
Probe length |
GC |
The percent GC of the probe sequence |
SEQUENCE |
Probe oligonucleotide sequence |
Data table |
ID |
SEQ_ID |
CHROMOSOME |
RANGE_GB |
SPOT_ID |
RANGE_START |
PROBE_COUNT |
LENGTH |
GC |
SEQUENCE |
CHR01FS003002567 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3002567 |
1 |
50 |
0.46 |
TAGAATGGAACTATGTCATGCCATCCATTCTGCGTGGTAGGACTCAGCAA |
CHR01FS003003786 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3003786 |
1 |
59 |
0.39 |
CATTATTCCCATTCAGCAGTTATTGAATGGCTAGTAACCCATTACCTATGTGTGAGTAC |
CHR01FS003011391 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3011391 |
1 |
59 |
0.39 |
ATTGAGGACAGCAAATACTTAAGATAATCAGATAGCGGTAGGCAAGCTAAGAACAGAAG |
CHR01FS003014357 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3014357 |
1 |
50 |
0.44 |
AAAGCAATCCCAATCAAATCAGGGAGTAGACAACACTGCCCTTTTTCTCC |
CHR01FS003018614 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3018614 |
1 |
50 |
0.44 |
AATCATGGCATCAATAGTGCTAAGGTGTCAAGGGCTACTAAGGTATGGAG |
CHR01FS003022241 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3022241 |
1 |
50 |
0.44 |
CTTGGCCATTCAAGTTTCATCAGTTGACAATCCTGGGTTTAGCTCTGTTC |
CHR01FS003026285 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3026285 |
1 |
50 |
0.44 |
TGGGCTAGCATTTGCGTTCTTTTAGGGTGTATATGACATTTGCGGAGGAT |
CHR01FS003034358 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3034358 |
1 |
51 |
0.43 |
GGCACATGTGACAATTTGGTATCATTCTTTATTGCCCGTGGTTGTGTCTTG |
CHR01FS003037908 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3037908 |
1 |
55 |
0.42 |
ATCAAAAGATTAATCCATCGGTTAGGTCAGTTCCTACATGACCCAGTTACTTCCC |
CHR01FS003040093 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3040093 |
1 |
50 |
0.44 |
TTTTCCTGACTACGTACTTACGGTCCATTTCTCATGGAGTCTTCTTCCAC |
CHR01FS003041991 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3041991 |
1 |
51 |
0.43 |
TTATCAAAGCAAGTCTGTTTTAGTAGGAGCGGCAGTGACCTCCTGGTTTTT |
CHR01FS003047748 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3047748 |
1 |
50 |
0.46 |
TGACAGTGGTGACGAAAAGGCTGTGCTGAGTGCACAAAAGAGGAGAAATT |
CHR01FS003050305 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3050305 |
1 |
57 |
0.40 |
GACCTAGTGCACTCATGACAAACAATCAGGTACAGTTGAGTACACTCGTTTATATAC |
CHR01FS003052595 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3052595 |
1 |
53 |
0.42 |
AGGAAGTCATACGGAGCACATGTCTTACACCCTATTCCCAGTTTATACATTCT |
CHR01FS003057911 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3057911 |
1 |
58 |
0.38 |
CAAGAACAGGAATTAGATTTTCTGTGAAAGTCTGATAGAACTCGGCATTAAACCCATC |
CHR01FS003061122 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3061122 |
1 |
56 |
0.41 |
TTCCCTACTGCCAAAGTGTCCAGTAGATAACCAAGGTAATTGGTAATAGTCTTGAG |
CHR01FS003065156 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3065156 |
1 |
50 |
0.46 |
TGCACGTGGGACGGCTCAGGATGTTGGTATGATGAATTACTAACTCAAGA |
CHR01FS003068324 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3068324 |
1 |
50 |
0.44 |
GATGCTGTACTACTGCTTAGCATACGCCAAAGGACTCAATATACAACCCA |
CHR01FS003072431 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3072431 |
1 |
58 |
0.40 |
TCGAAATAATTCTACTCGAAGACCTAGCTATGACACTCTCAACTAGAGTGGCAATTCT |
CHR01FS003076180 |
chr1:1-197195432 |
chr1 |
NC_000067.5 |
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3076180 |
1 |
64 |
0.38 |
AATATTGCGCTTGTTCTCGTCTTATATATGCAGCCTTTTCTAAGAGTGATAATGTCATAGCCTG |
Total number of rows: 713358
Table truncated, full table size 87373 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GPL10989_080603_MM9_WG_CGH_HX3.ndf.gz |
38.8 Mb |
(ftp)(http) |
NDF |
GPL10989_080603_MM9_WG_CGH_HX3.pos.gz |
5.4 Mb |
(ftp)(http) |
POS |
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