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Status
Public on Apr 27, 2010
Title
UHN Microarray Centre Human 8.1K CpG island microarray
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens
Manufacturer
UHN Microarray Centre, University of Toronto, Canada
Manufacture protocol
Our microarrays are printed on UltraGAPS™ slides (Corning Inc.) using high-precision robotics. Printed arrays are processed following Corning's protocol. Single-spotted array containing 8,109 CpG-island clones consolidated from the UHN's HCGI12K set and an independent 8.5K set obtained from Tim Huang at the Ohio State University (Columbus, OH).* This library and array was described in Heisler L, et. al., CpG Island microarray probe sequences derived from a physical library are representative of CpG Islands annotated on the human genome. NAR (2005) 33:2952-2961.
Submission date
Apr 19, 2010
Last update date
Jan 18, 2013
Contact name
Valerie Wailin Hu
E-mail(s)
valhu@gwu.edu
Phone
202-994-8431
Organization name
The George Washington University School of Medicine and Health Sciences
Department
Biochemistry and Molecular Medicine
Lab
Ross Hall 233
Street address
2300 Eye St., N.W., Rm232-233
City
Washington
State/province
DC
ZIP/Postal code
20037
Country
USA
Samples (335)
GSM534541 , GSM534542 , GSM534543 , GSM534544 , GSM534545 , GSM534546
GSM534547 ,
GSM534548 ,
GSM534549 ,
GSM534550 ,
GSM534551 ,
GSM534552 ,
GSM534553 ,
GSM534554 ,
GSM534555 ,
GSM534556 ,
GSM534557 ,
GSM534558 ,
GSM534559 ,
GSM534560 ,
GSM534561 ,
GSM534562 ,
GSM534563 ,
GSM534564 ,
GSM534565 ,
GSM534566 ,
GSM534567 ,
GSM534568 ,
GSM534569 ,
GSM534570 ,
GSM534571 ,
GSM922330 ,
GSM922331 ,
GSM922332 ,
GSM922333 ,
GSM922334 ,
GSM922335 ,
GSM922336 ,
GSM922337 ,
GSM922338 ,
GSM922339 ,
GSM922340 ,
GSM922341 ,
GSM922342 ,
GSM922343 ,
GSM922344 ,
GSM922345 ,
GSM922346 ,
GSM922347 ,
GSM922348 ,
GSM922349 ,
GSM922350 ,
GSM922351 ,
GSM922352 ,
GSM922353 ,
GSM922354 ,
GSM922355 ,
GSM922356 ,
GSM922357 ,
GSM922358 ,
GSM922359 ,
GSM922360 ,
GSM922361 ,
GSM922362 ,
GSM922363 ,
GSM922364 ,
GSM922365 ,
GSM922366 ,
GSM922367 ,
GSM922368 ,
GSM922369 ,
GSM922370 ,
GSM922371 ,
GSM922372 ,
GSM922373 ,
GSM922374 ,
GSM922375 ,
GSM922376 ,
GSM922377 ,
GSM922378 ,
GSM922379 ,
GSM922380 ,
GSM922381 ,
GSM922382 ,
GSM922383 ,
GSM922384 ,
GSM922385 ,
GSM922386 ,
GSM922387 ,
GSM922388 ,
GSM922389 ,
GSM922390 ,
GSM922391 ,
GSM922392 ,
GSM922393 ,
GSM922394 ,
GSM922395 ,
GSM922396 ,
GSM922397 ,
GSM922398 ,
GSM922399 ,
GSM922400 ,
GSM922401 ,
GSM922402 ,
GSM922403 ,
GSM922404 ,
GSM922405 ,
GSM922406 ,
GSM922407 ,
GSM922408 ,
GSM922409 ,
GSM922410 ,
GSM922411 ,
GSM922412 ,
GSM922413 ,
GSM922414 ,
GSM922415 ,
GSM922416 ,
GSM922417 ,
GSM922418 ,
GSM922419 ,
GSM922420 ,
GSM922421 ,
GSM922422 ,
GSM922423 ,
GSM922424 ,
GSM922425 ,
GSM922426 ,
GSM922427 ,
GSM922428 ,
GSM922429 ,
GSM922430 ,
GSM922431 ,
GSM922432 ,
GSM922433 ,
GSM922434 ,
GSM922435 ,
GSM922436 ,
GSM922437 ,
GSM922438 ,
GSM922439 ,
GSM922440 ,
GSM922441 ,
GSM922442 ,
GSM922443 ,
GSM922444 ,
GSM922445 ,
GSM922446 ,
GSM922447 ,
GSM922448 ,
GSM922449 ,
GSM922450 ,
GSM922451 ,
GSM922452 ,
GSM922453 ,
GSM922454 ,
GSM922455 ,
GSM922456 ,
GSM922457 ,
GSM922458 ,
GSM922459 ,
GSM922460 ,
GSM922461 ,
GSM922462 ,
GSM922463 ,
GSM922464 ,
GSM922465 ,
GSM922466 ,
GSM922467 ,
GSM922468 ,
GSM922469 ,
GSM922470 ,
GSM922471 ,
GSM922472 ,
GSM922473 ,
GSM922474 ,
GSM922475 ,
GSM922476 ,
GSM922477 ,
GSM922478 ,
GSM922479 ,
GSM922480 ,
GSM922481 ,
GSM922482 ,
GSM922483 ,
GSM922484 ,
GSM922485 ,
GSM922486 ,
GSM922487 ,
GSM922488 ,
GSM922489 ,
GSM922490 ,
GSM922491 ,
GSM922492 ,
GSM922493 ,
GSM922494 ,
GSM922495 ,
GSM922496 ,
GSM922497 ,
GSM922498 ,
GSM922499 ,
GSM922500 ,
GSM922501 ,
GSM922502 ,
GSM922503 ,
GSM922504 ,
GSM922505 ,
GSM922506 ,
GSM922507 ,
GSM922508 ,
GSM922509 ,
GSM922510 ,
GSM922511 ,
GSM922512 ,
GSM922513 ,
GSM922514 ,
GSM922515 ,
GSM922516 ,
GSM922517 ,
GSM922518 ,
GSM922519 ,
GSM922520 ,
GSM922521 ,
GSM922522 ,
GSM922523 ,
GSM922524 ,
GSM922525 ,
GSM922526 ,
GSM922527 ,
GSM922528 ,
GSM922529 ,
GSM922530 ,
GSM922531 ,
GSM922532 ,
GSM922533 ,
GSM922534 ,
GSM922535 ,
GSM922536 ,
GSM922537 ,
GSM922538 ,
GSM922539 ,
GSM922540 ,
GSM922541 ,
GSM922542 ,
GSM922543 ,
GSM922544 ,
GSM922545 ,
GSM922546 ,
GSM922547 ,
GSM922548 ,
GSM922549 ,
GSM922550 ,
GSM922551 ,
GSM922552 ,
GSM922553 ,
GSM922554 ,
GSM922555 ,
GSM922556 ,
GSM922557 ,
GSM922558 ,
GSM922559 ,
GSM922560 ,
GSM922561 ,
GSM922562 ,
GSM922563 ,
GSM922564 ,
GSM922566 ,
GSM922567 ,
GSM922568 ,
GSM922569 ,
GSM922570 ,
GSM922571 ,
GSM922572 ,
GSM922573 ,
GSM922574 ,
GSM922575 ,
GSM922576 ,
GSM922577 ,
GSM922578 ,
GSM922579 ,
GSM922580 ,
GSM922581 ,
GSM922582 ,
GSM922583 ,
GSM922584 ,
GSM922585 ,
GSM922586 ,
GSM922587 ,
GSM922588 ,
GSM922589 ,
GSM922590 ,
GSM922591 ,
GSM922592 ,
GSM922593 ,
GSM922594 ,
GSM922595 ,
GSM922596 ,
GSM922597 ,
GSM922598 ,
GSM922599 ,
GSM922600 ,
GSM922601 ,
GSM922602 ,
GSM922603 ,
GSM922604 ,
GSM922605 ,
GSM922606 ,
GSM922607 ,
GSM922608 ,
GSM922609 ,
GSM922610 ,
GSM922611 ,
GSM922612 ,
GSM922613 ,
GSM922614 ,
GSM922615 ,
GSM922616 ,
GSM922617 ,
GSM922618 ,
GSM922619 ,
GSM922620 ,
GSM922621 ,
GSM922622 ,
GSM922623 ,
GSM922624 ,
GSM922625 ,
GSM922626 ,
GSM922627 ,
GSM922628 ,
GSM922629 ,
GSM922630 ,
GSM922631 ,
GSM922632 ,
GSM922633 ,
GSM922634
Series (2)
GSE21395
Global methylation profiling of lymphoblastoid cell lines reveals epigenetic contributions to autism spectrum disorders
GSE37579
DNA modification study of major depressive disorder: beyond locus-by-locus comparisons.
Data table header descriptions
ID
Genome Location
RANGE_GB
RANGE_START
RANGE_END
Gene Symbol1
Within strand
Description1
Gene description
Gene Symbol2
Upstream strand
Description2
Gene description
Gene Symbol3
Downstream strand
Description3
Gene description
SPOT_ID
Data table
ID
Genome Location
RANGE_GB
RANGE_START
RANGE_END
Gene Symbol1
Description1
Gene Symbol2
Description2
Gene Symbol3
Description3
SPOT_ID
UHNhscpg0000001
chrX:137620704-137621595
NC_000023.8
137620704
137621595
FGF13
fibroblast growth factor 13 isoform 1A
AK055382
Hypothetical protein FLJ30820 (Hypothetical protein FLJ30672).
F9
coagulation factor IX
UHNhscpg0000004
chr12:103903964-103904887
NC_000012.9
103903964
103904887
SLC41A2
solute carrier family 41, member 2
ALDH1L2
aldehyde dehydrogenase 1 family, member L2
UHNhscpg0000005
chr10:1084361-1084422
NC_000010.8
1084361
1084422
IDI1
isopentenyl-diphosphate delta isomerase
BC050694
HT009-like protein.
WDR37
WD repeat domain 37
UHNhscpg0000006
chr15:70765263-70765993
NC_000015.8
70765263
70765993
HIGD2BP
HIG1 domain family, member 2B pseudogene
ARIH1
ariadne homolog, ubiquitin-conjugating enzyme E2
ADPGK
Hypothetical protein DKFZp667C1917 (Fragment).
UHNhscpg0000007
chr17:73872256-73872883
NC_000017.9
73872256
73872883
SOCS3
suppressor of cytokine signaling 3
PGS1
phosphatidylglycerophosphate synthase
UHNhscpg0000008
chr6:99948251-99948683
NC_000006.9
99948251
99948683
COQ3
methyltransferase COQ3
C6orf168
hypothetical protein LOC84553
C6orf111
hypothetical protein LOC25957
UHNhscpg0000009
chr1:8799536-8800122
NC_000001.8
8799536
8800122
RERE
atrophin-1 like protein
ERRFI1
mitogen-inducible gene 6 protein
ENO1
enolase 1
UHNhscpg0000011
chr16:75781526-75782001
NC_000016.8
75781526
75782001
CNTNAP4
cell recognition protein CASPR4 isoform 1
MON1B
MON1 homolog B
UHNhscpg0000012
chr6:53320556-53321007
NC_000006.9
53320556
53321007
ELOVL5
homolog of yeast long chain polyunsaturated
AK097937
Hypothetical protein FLJ40618.
GCLC
glutamate-cysteine ligase, catalytic subunit
UHNhscpg0000013
chr4:24770528-24771396
NC_000004.9
24770528
24771396
SLA/LP
UGA suppressor tRNA-associated protein (tRNA(Ser)Sec-associated antigenic protein) (SLA/LP autoantigen) (Soluble liver antigen) (SLA) (Liver-pancreas antigen) (LP) (SLA-p35).
LGI2
leucine-rich repeat LGI family, member 2
PI4K2B
phosphatidylinositol 4-kinase type-II beta
UHNhscpg0000017
chr2:148494916-148495213
NC_000002.9
148494916
148495213
ORC4L
origin recognition complex subunit 4
MBD5
methyl-CpG binding domain protein 5
UHNhscpg0000018
chr18:72334170-72334438
NC_000018.8
72334170
72334438
LOC284274
hypothetical protein LOC284274
FLJ44881
hypothetical protein LOC400661
UHNhscpg0000020
chr7:75669419-75670352
NC_000007.11
75669419
75670352
MDH2
mitochondrial malate dehydrogenase precursor
FLJ37078
hypothetical protein LOC222183
UHNhscpg0000021
chr14:19951006-19951760
NC_000014.7
19951006
19951760
TEP1
telomerase-associated protein 1
TEP1
Telomerase protein component 1 variant (Fragment).
OSGEP
O-sialoglycoprotein endopeptidase
UHNhscpg0000022
chr11:61111720-61112385
NC_000011.8
61111720
61112385
SYT7
synaptotagmin VII
C11orf11
neural stem cell-derived dendrite regulator
UHNhscpg0000025
chr10:75370203-75371061
NC_000010.8
75370203
75371061
C10orf55
Hypothetical protein C10orf55.
VCL
vinculin isoform meta-VCL
UHNhscpg0000026
chr3:182896508-182896759
NC_000003.9
182896508
182896759
DNAJC19
translocase of the inner mitochondrial membrane
SOX2
sex-determining region Y-box 2
UHNhscpg0000029
chr19:60679555-60680029
NC_000019.8
60679555
60680029
ZNF628
zinc finger protein 628
ISOC2
isochorismatase domain containing 2
KLP1
K562 cell-derived leucine-zipper-like protein 1
UHNhscpg0000030
chr2:44076267-44077277
NC_000002.9
44076267
44077277
LRPPRC
leucine-rich PPR motif-containing protein
ABCG8
sterolin 2
PPM1B
protein phosphatase 1B isoform 5
UHNhscpg0000033
chr2:135392166-135392392
NC_000002.9
135392166
135392392
ACMSD
aminocarboxymuconate semialdehyde decarboxylase
CCNT2
cyclin T2 isoform a
Total number of rows: 8448 Table truncated, full table size 1333 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL10342_sequence.txt.gz
2.4 Mb
(ftp) (http)
TXT