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Platform GPL10211 Query DataSets for GPL10211
Status Public on Mar 18, 2010
Title JCVI PFGRC Escherichia coli 17K v1 array designed primarily based on strain TW14359
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Escherichia coli
Manufacturer JCVI PFGRC
Manufacture protocol QEH, with arrayer AUSHON, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Coating aminosilane
 
Description This set includes 7644 oligonucleotides, has 17328 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Mar 17, 2010
Last update date Mar 18, 2010
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain Sakai Target map of strain Sakai
Strain EDL933 Target map of strain EDL933
Strain EC4115 Target map of strain EC4115
Strain TW14359 Target map of strain TW14359
ORF primary target link in Entrez Gene
SPOT_ID

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain Sakai Strain EDL933 Strain EC4115 Strain TW14359 ORF SPOT_ID
QEH00001_A_10 TAACCGTTGTTGCGACAGGTATCGGCATGGACAAACGTCCTGAAATCACTCTGGTGACCAATAAGCAGGT 48.57 29 81 TW14359 ECSP_0098 GTP-binding tubulin-like cell division protein ftsZ ECs0099::70::100.0::8.7E-11::+ Z0105::70::100.0::8.7E-11::+ ECH74115_0103::70::100.0::8.7E-11::+ ECSP_0098::70::100.0::8.7E-11::+ ECSP_0098
QEH00001_A_11 GGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGCGGTTATTAC 44.29 32 92 TW14359 ECSP_0005 hypothetical protein yaaX ECs0005::70::100.0::4.1E-11::+ Z0005::70::100.0::4.1E-11::+ ECH74115_0006::70::100.0::4.1E-11::+ ECSP_0005::70::100.0::4.1E-11::+ ECSP_0005
QEH00001_A_12 GCCGGCCAACACCGGGGTCATCTATCGTCGCACCGACTTGAATCCACCGGTAGATTTCCCGGCCGATGCC 62.86 32 122 TW14359 ECSP_0099 UDP-3-O-acyl N-acetylglucosamine deacetylase lpxC ECs0100::70::100.0::6.3E-11::+ Z0106::70::100.0::6.3E-11::+ ECH74115_0104::70::100.0::6.3E-11::+ ECSP_0099::70::100.0::6.3E-11::+ ECSP_0099
QEH00001_A_13 GGGATCCGTCTTGAGAATACCCGAGGGAAAGATCTGTATCAATTCTGGGGAGATATCATCACCAACAAGC 47.14 29 84 TW14359 ECSP_0006 hypothetical protein yaaA ECs0006::70::98.57143::1.1E-10::+ Z0006::70::98.57143::1.1E-10::+ ECH74115_0007::70::100.0::4.0E-11::+ ECSP_0006::70::100.0::4.0E-11::+ ECSP_0006
QEH00001_A_14 TGGCAATAACGTGAGTGGAATACTGACGCGCTGGCGACAGTTTGGTAAACGCTACTTCTGGCCGCATCTC 52.86 30 94 EC4115 ECH74115_0105 SecA regulator SecM secM ECs0101::60::100.0::4.3E-9::+ Z0107::60::100.0::4.3E-9::+ ECH74115_0105::70::100.0::2.1E-11::+ ECSP_0100::60::100.0::4.3E-9::+ ECH74115_0105
QEH00001_A_15 AATTTGACTGCCATATTACTGCTCTCGCCTGTGGTTTATACCATTGCCAGTGATTATCTACGCCAGCGTA 44.29 31 85 TW14359 ECSP_0007 predicted transporter yaaJ ECs0007::70::98.57143::2.8E-10::+ Z0007::70::98.57143::2.8E-10::+ ECH74115_0008::70::100.0::1.1E-10::+ ECSP_0007::70::100.0::1.1E-10::+ ECSP_0007
QEH00001_A_16 AAGTTATCATCGTTGACGAACACACCGGTCGTACCATGCAGGGCCGTCGCTGGTCCGATGGTCTGCACCA 57.14 30 96 TW14359 ECSP_0101 preprotein translocase subunit, ATPase secA ECs0102::70::100.0::1.4E-10::+ Z0108::70::100.0::1.4E-10::+ ECH74115_0106::70::100.0::1.4E-10::+ ECSP_0101::70::100.0::1.4E-10::+ ECSP_0101
QEH00001_A_17 CTGTTTAAAGAGAAATACTATCATGACGGACAAATTGACCTCCCTTCGTCAGTACACCACCGTAGTGGCC 45.71 29 86 EC4115 ECH74115_0009 transaldolase B tal2 ECH74115_0009::70::100.0::7.4E-11::+ ECH74115_0009
QEH00001_A_18 CGAGAACAATGAAATCTTTATAACGCGTCGCGCAGCAGATGCGCACATGGCGAATAAACTGGAGTTTCCC 48.57 30 119 TW14359 ECSP_0102 nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP mutT ECs0103::70::100.0::3.1E-11::+ Z0109::70::100.0::3.1E-11::+ ECH74115_0107::70::100.0::3.1E-11::+ ECSP_0102::70::100.0::3.1E-11::+ ECSP_0102
QEH00001_A_19 CGTTGAAACGGCACCAGAAGTGGTTGCTGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAA 51.43 30 87 TW14359 ECSP_0009 putative molybdochelatase mog ECs0009::70::100.0::2.1E-11::+ Z0009::70::100.0::2.1E-11::+ ECH74115_0010::70::100.0::2.1E-11::+ ECSP_0009::70::100.0::2.1E-11::+ ECSP_0009
QEH00001_A_2 GTGAAGGCGGTATTGACGCATATCCTGTCGACCCGAAAGAAGTTGACGTGACGCAACTGAAGTCGATGGG 52.86 30 79 TW14359 ECSP_0095 D-alanine:D-alanine ligase ddlB ECs0096::70::100.0::6.3E-11::+ Z0102::70::100.0::6.3E-11::+ ECH74115_0100::70::100.0::6.3E-11::+ ECSP_0095::70::100.0::6.3E-11::+ ECSP_0095
QEH00001_A_20 GAAGAAAAACGAATCCCCAGCAGTGGCGATCTTTCCGAAAGCGATGACTGGAGCGAAGAGCCAAAGCAGT 51.43 30 85 TW14359 ECSP_0103 zinc-binding protein yacG ECs0105::70::100.0::6.2E-11::+ Z0111::70::100.0::6.2E-11::+ ECH74115_0108::70::100.0::6.2E-11::+ ECSP_0103::70::100.0::6.2E-11::+ ECSP_0103
QEH00001_A_21 ACGTAGGTTATTTCGCTCTGGACGGTATTATTCTTGCCATGGGCATTTTCTACGGCGGCATCGCGCAAAT 48.57 30 84 TW14359 ECSP_0010 conserved inner membrane protein associated with acetate transport yaaH ECs0010::70::100.0::2.2E-11::+ Z0010::70::100.0::2.2E-11::+ ECH74115_0011::70::100.0::2.2E-11::+ ECSP_0010::70::100.0::2.2E-11::+ ECSP_0010
QEH00001_A_22 GTTTTATGCCGCTGGACACTGAAAACGGACAGGTACCGGAACGTCTGGATTTCGAACTGGCCTGTTGCTA 51.43 29 105 TW14359 ECSP_0104 hypothetical protein yacF ECs0106::70::100.0::3.4E-11::+ Z0112::70::100.0::3.4E-11::+ ECH74115_0109::70::100.0::3.4E-11::+ ECSP_0104::70::100.0::3.4E-11::+ ECSP_0104
QEH00001_A_23 TGAAAAAGGCAAAACTCGCCTCTCCAGCGTACTGATGCGCAACGAACTGTTTAAATCGATGGAAGGACAT 45.71 30 85 TW14359 ECSP_0011 hypothetical protein yaaW ECs0012::70::100.0::2.8E-11::+ Z0011::70::100.0::2.8E-11::+ ECH74115_0012::70::100.0::2.8E-11::+ ECSP_0011::70::100.0::2.8E-11::+ ECSP_0011
QEH00001_A_24 GCATCGGATGTTGCCCGCCTGCACGCACACTATTTGCAGCTTGCGTCGCAGTTTGTCTCACAGGAAAAAC 54.29 30 85 TW14359 ECSP_0105 putative DNA repair protein coaE ECs0107::70::100.0::2.0E-11::+ Z0113::70::100.0::2.0E-11::+ ECH74115_0110::70::100.0::2.0E-11::+ ECSP_0105::70::100.0::2.0E-11::+ ECSP_0105
QEH00001_A_3 GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGTCAGCCCGCACCGTTACCTGTGGT 60.0 33 130 TW14359 ECSP_0001 hypothetical protein ECH74115_0001::70::100.0::5.6E-11::+ ECSP_0001::70::100.0::5.6E-11::+ ECSP_0001
QEH00001_A_5 CCCGGGGATGAAAGGAATGGTCGGCATGGCGGCGCGCGTCTTTGCTGCAATGTCACGCGCCCGTATTTCC 62.86 30 121 TW14359 ECSP_0002 aspartokinase/homoserine dehydrogenase I ECs0002::70::100.0::1.4E-10::+ Z0002::70::100.0::1.4E-10::+ ECH74115_0003::70::100.0::1.4E-10::+ ECSP_0002::70::100.0::1.4E-10::+ ECSP_0002
QEH00001_A_6 TTCCTGCTGACCGTTTTAACGACAGTGTTGGTGAGCGGCTGGGTCGTGTTGGGCTGGATGGAAGATGCGC 57.14 29 76 TW14359 ECSP_0096 membrane anchored protein involved in growth of wall at septum ftsQ ECs0097::70::100.0::5.0E-11::+ Z0103::70::100.0::5.0E-11::+ ECH74115_0101::70::100.0::5.0E-11::+ ECSP_0096::70::100.0::5.0E-11::+ ECSP_0096
QEH00001_A_7 GGAGATGTAGTCACGGTTGAGTCGGCAGAGACATTCAGTCTCAACAACCTCGGACGCTTTGCCGATAAGC 52.86 29 80 TW14359 ECSP_0003 homoserine kinase ECs0003::70::100.0::6.5E-11::+ Z0003::70::100.0::6.5E-11::+ ECH74115_0004::70::100.0::6.5E-11::+ ECSP_0003::70::100.0::6.5E-11::+ ECSP_0003

Total number of rows: 8144

Table truncated, full table size 2445 Kbytes.




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