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Platform GPL10208 Query DataSets for GPL10208
Status Public on Mar 18, 2010
Title JCVI PFGRC Escherichia coli 17K v1 array designed primarily based on strain EC4115
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Escherichia coli
Manufacturer JCVI PFGRC
Manufacture protocol QEH, with arrayer AUSHON, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Coating aminosilane
 
Description This set includes 7644 oligonucleotides, has 17328 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Mar 17, 2010
Last update date Mar 18, 2010
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain Sakai Target map of strain Sakai
Strain EDL933 Target map of strain EDL933
Strain EC4115 Target map of strain EC4115
Strain TW14359 Target map of strain TW14359
ORF primary target link in Entrez Gene
SPOT_ID

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain Sakai Strain EDL933 Strain EC4115 Strain TW14359 ORF SPOT_ID
QEH00001_A_10 TAACCGTTGTTGCGACAGGTATCGGCATGGACAAACGTCCTGAAATCACTCTGGTGACCAATAAGCAGGT 48.57 29 81 EC4115 ECH74115_0103 cell division protein FtsZ ftsZ ECs0099::70::100.0::8.7E-11::+ Z0105::70::100.0::8.7E-11::+ ECH74115_0103::70::100.0::8.7E-11::+ ECSP_0098::70::100.0::8.7E-11::+ ECH74115_0103
QEH00001_A_11 GGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGCGGTTATTAC 44.29 32 92 EC4115 ECH74115_0006 hypothetical protein ECs0005::70::100.0::4.1E-11::+ Z0005::70::100.0::4.1E-11::+ ECH74115_0006::70::100.0::4.1E-11::+ ECSP_0005::70::100.0::4.1E-11::+ ECH74115_0006
QEH00001_A_12 GCCGGCCAACACCGGGGTCATCTATCGTCGCACCGACTTGAATCCACCGGTAGATTTCCCGGCCGATGCC 62.86 32 122 EC4115 ECH74115_0104 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase lpxC ECs0100::70::100.0::6.3E-11::+ Z0106::70::100.0::6.3E-11::+ ECH74115_0104::70::100.0::6.3E-11::+ ECSP_0099::70::100.0::6.3E-11::+ ECH74115_0104
QEH00001_A_13 GGGATCCGTCTTGAGAATACCCGAGGGAAAGATCTGTATCAATTCTGGGGAGATATCATCACCAACAAGC 47.14 29 84 EC4115 ECH74115_0007 hypothetical protein ECs0006::70::98.57143::1.1E-10::+ Z0006::70::98.57143::1.1E-10::+ ECH74115_0007::70::100.0::4.0E-11::+ ECSP_0006::70::100.0::4.0E-11::+ ECH74115_0007
QEH00001_A_14 TGGCAATAACGTGAGTGGAATACTGACGCGCTGGCGACAGTTTGGTAAACGCTACTTCTGGCCGCATCTC 52.86 30 94 EC4115 ECH74115_0105 SecA regulator SecM secM ECs0101::60::100.0::4.3E-9::+ Z0107::60::100.0::4.3E-9::+ ECH74115_0105::70::100.0::2.1E-11::+ ECSP_0100::60::100.0::4.3E-9::+ ECH74115_0105
QEH00001_A_15 AATTTGACTGCCATATTACTGCTCTCGCCTGTGGTTTATACCATTGCCAGTGATTATCTACGCCAGCGTA 44.29 31 85 EC4115 ECH74115_0008 amino acid carrier protein agcS ECs0007::70::98.57143::2.8E-10::+ Z0007::70::98.57143::2.8E-10::+ ECH74115_0008::70::100.0::1.1E-10::+ ECSP_0007::70::100.0::1.1E-10::+ ECH74115_0008
QEH00001_A_16 AAGTTATCATCGTTGACGAACACACCGGTCGTACCATGCAGGGCCGTCGCTGGTCCGATGGTCTGCACCA 57.14 30 96 EC4115 ECH74115_0106 preprotein translocase subunit SecA secA ECs0102::70::100.0::1.4E-10::+ Z0108::70::100.0::1.4E-10::+ ECH74115_0106::70::100.0::1.4E-10::+ ECSP_0101::70::100.0::1.4E-10::+ ECH74115_0106
QEH00001_A_17 CTGTTTAAAGAGAAATACTATCATGACGGACAAATTGACCTCCCTTCGTCAGTACACCACCGTAGTGGCC 45.71 29 86 EC4115 ECH74115_0009 transaldolase B tal2 ECH74115_0009::70::100.0::7.4E-11::+ ECH74115_0009
QEH00001_A_18 CGAGAACAATGAAATCTTTATAACGCGTCGCGCAGCAGATGCGCACATGGCGAATAAACTGGAGTTTCCC 48.57 30 119 EC4115 ECH74115_0107 nucleoside triphosphate pyrophosphohydrolase mutT ECs0103::70::100.0::3.1E-11::+ Z0109::70::100.0::3.1E-11::+ ECH74115_0107::70::100.0::3.1E-11::+ ECSP_0102::70::100.0::3.1E-11::+ ECH74115_0107
QEH00001_A_19 CGTTGAAACGGCACCAGAAGTGGTTGCTGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAA 51.43 30 87 EC4115 ECH74115_0010 molybdenum cofactor biosynthesis protein mogA ECs0009::70::100.0::2.1E-11::+ Z0009::70::100.0::2.1E-11::+ ECH74115_0010::70::100.0::2.1E-11::+ ECSP_0009::70::100.0::2.1E-11::+ ECH74115_0010
QEH00001_A_2 GTGAAGGCGGTATTGACGCATATCCTGTCGACCCGAAAGAAGTTGACGTGACGCAACTGAAGTCGATGGG 52.86 30 79 EC4115 ECH74115_0100 D-alanine--D-alanine ligase ddl ECs0096::70::100.0::6.3E-11::+ Z0102::70::100.0::6.3E-11::+ ECH74115_0100::70::100.0::6.3E-11::+ ECSP_0095::70::100.0::6.3E-11::+ ECH74115_0100
QEH00001_A_20 GAAGAAAAACGAATCCCCAGCAGTGGCGATCTTTCCGAAAGCGATGACTGGAGCGAAGAGCCAAAGCAGT 51.43 30 85 EC4115 ECH74115_0108 zinc-binding protein ECs0105::70::100.0::6.2E-11::+ Z0111::70::100.0::6.2E-11::+ ECH74115_0108::70::100.0::6.2E-11::+ ECSP_0103::70::100.0::6.2E-11::+ ECH74115_0108
QEH00001_A_21 ACGTAGGTTATTTCGCTCTGGACGGTATTATTCTTGCCATGGGCATTTTCTACGGCGGCATCGCGCAAAT 48.57 30 84 EC4115 ECH74115_0011 hypothetical protein ECs0010::70::100.0::2.2E-11::+ Z0010::70::100.0::2.2E-11::+ ECH74115_0011::70::100.0::2.2E-11::+ ECSP_0010::70::100.0::2.2E-11::+ ECH74115_0011
QEH00001_A_22 GTTTTATGCCGCTGGACACTGAAAACGGACAGGTACCGGAACGTCTGGATTTCGAACTGGCCTGTTGCTA 51.43 29 105 EC4115 ECH74115_0109 hypothetical protein ECs0106::70::100.0::3.4E-11::+ Z0112::70::100.0::3.4E-11::+ ECH74115_0109::70::100.0::3.4E-11::+ ECSP_0104::70::100.0::3.4E-11::+ ECH74115_0109
QEH00001_A_23 TGAAAAAGGCAAAACTCGCCTCTCCAGCGTACTGATGCGCAACGAACTGTTTAAATCGATGGAAGGACAT 45.71 30 85 EC4115 ECH74115_0012 hypothetical protein ECs0012::70::100.0::2.8E-11::+ Z0011::70::100.0::2.8E-11::+ ECH74115_0012::70::100.0::2.8E-11::+ ECSP_0011::70::100.0::2.8E-11::+ ECH74115_0012
QEH00001_A_24 GCATCGGATGTTGCCCGCCTGCACGCACACTATTTGCAGCTTGCGTCGCAGTTTGTCTCACAGGAAAAAC 54.29 30 85 EC4115 ECH74115_0110 dephospho-CoA kinase coaE ECs0107::70::100.0::2.0E-11::+ Z0113::70::100.0::2.0E-11::+ ECH74115_0110::70::100.0::2.0E-11::+ ECSP_0105::70::100.0::2.0E-11::+ ECH74115_0110
QEH00001_A_3 GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGTCAGCCCGCACCGTTACCTGTGGT 60.0 33 130 EC4115 ECH74115_0001 hypothetical protein ECH74115_0001::70::100.0::5.6E-11::+ ECSP_0001::70::100.0::5.6E-11::+ ECH74115_0001
QEH00001_A_5 CCCGGGGATGAAAGGAATGGTCGGCATGGCGGCGCGCGTCTTTGCTGCAATGTCACGCGCCCGTATTTCC 62.86 30 121 EC4115 ECH74115_0003 bifunctional aspartokinase I/homeserine dehydrogenase I thrA ECs0002::70::100.0::1.4E-10::+ Z0002::70::100.0::1.4E-10::+ ECH74115_0003::70::100.0::1.4E-10::+ ECSP_0002::70::100.0::1.4E-10::+ ECH74115_0003
QEH00001_A_6 TTCCTGCTGACCGTTTTAACGACAGTGTTGGTGAGCGGCTGGGTCGTGTTGGGCTGGATGGAAGATGCGC 57.14 29 76 EC4115 ECH74115_0101 cell division protein FtsQ ftsQ ECs0097::70::100.0::5.0E-11::+ Z0103::70::100.0::5.0E-11::+ ECH74115_0101::70::100.0::5.0E-11::+ ECSP_0096::70::100.0::5.0E-11::+ ECH74115_0101
QEH00001_A_7 GGAGATGTAGTCACGGTTGAGTCGGCAGAGACATTCAGTCTCAACAACCTCGGACGCTTTGCCGATAAGC 52.86 29 80 EC4115 ECH74115_0004 homoserine kinase thrB ECs0003::70::100.0::6.5E-11::+ Z0003::70::100.0::6.5E-11::+ ECH74115_0004::70::100.0::6.5E-11::+ ECSP_0003::70::100.0::6.5E-11::+ ECH74115_0004

Total number of rows: 8144

Table truncated, full table size 2474 Kbytes.




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