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Platform GPL10153 Query DataSets for GPL10153
Status Public on Mar 10, 2010
Title Agilent-023642 SurePrint G3 Human High-Resolution Discovery Microarray 1x1M (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description SurePrint G3 Human High-Resolution Discovery Microarray, 1x1M

Arrays of this design have barcodes that begin with 16023642 or 2523642.

Data table annotations based on build hg18:NCBI36:Mar2006.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Mar 09, 2010
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (26) GSM927252, GSM927253, GSM927254, GSM927255, GSM927256, GSM927257 
Series (6)
GSE37759 A high dimensional deep sequencing study of non-small cell lung adenocarcinoma in never-smoker Korean females [aCGH]
GSE37765 A high dimensional deep sequencing study of non-small cell lung adenocarcinoma in never-smoker Korean females
GSE87913 Individuals with excess numbers of germline de novo CNVs [Agilent]
Relations
Alternative to GPL15480

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Agilent Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank or RefSeq Accession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
RANGE_GB RefSeq.version of chromosome (NBCI Build 36)
RANGE_START Start position (relative to the RANGE_GB accession)
RANGE_END End position (relative to the RANGE_GB accession)
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION RANGE_GB RANGE_START RANGE_END CYTOBAND DESCRIPTION
1 534 1824 HsCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 A_16_P19555081 FALSE NM_001130963 TMEM194A transmembrane protein 194A ref|NM_001130963|ref|NM_015257 chr12:55739521-55739580 NC_000012.10 55739521 55739580 hs|q13.3 Homo sapiens transmembrane protein 194A (TMEM194A), transcript variant 1, mRNA.
5 534 1816 A_16_P18337016 FALSE NM_019607 C8orf44 chromosome 8 open reading frame 44 ref|NM_019607 chr8:67755552-67755611 NC_000008.9 67755552 67755611 hs|q13.1 Homo sapiens chromosome 8 open reading frame 44 (C8orf44), mRNA.
6 534 1814 A_18_P10758820 FALSE NM_194298 SLC16A9 solute carrier family 16, member 9 (monocarboxylic acid transporter 9) ref|NM_194298 chr10:61097928-61097987 NC_000010.9 61097928 61097987 hs|q21.1 Homo sapiens solute carrier family 16, member 9 (monocarboxylic acid transporter 9) (SLC16A9), mRNA.
7 534 1812 A_16_P19310439 FALSE NM_001142699 DLG2 discs, large homolog 2 (Drosophila) ref|NM_001142699 chr11:84354436-84354495 NC_000011.8 84354436 84354495 hs|q14.1 Homo sapiens discs, large homolog 2 (Drosophila) (DLG2), transcript variant 1, mRNA.
8 534 1810 A_16_P39107930 FALSE NM_001010848 NRG3 neuregulin 3 ref|NM_001010848 chr10:83949332-83949391 NC_000010.9 83949332 83949391 hs|q23.1 Homo sapiens neuregulin 3 (NRG3), mRNA.
9 534 1808 A_18_P17252506 FALSE NM_017416 IL1RAPL2 interleukin 1 receptor accessory protein-like 2 ref|NM_017416 chrX:104292983-104293042 NC_000023.9 104292983 104293042 hs|q22.3 Homo sapiens interleukin 1 receptor accessory protein-like 2 (IL1RAPL2), mRNA.
10 534 1806 A_18_P14518515 FALSE chr3:178171303-178171362 NC_000003.10 178171303 178171362 hs|q26.32
11 534 1804 A_18_P13142438 FALSE NM_003743 NCOA1 nuclear receptor coactivator 1 ref|NM_003743|ref|NM_147223|ref|NM_147233 chr2:24803949-24804008 NC_000002.10 24803949 24804008 hs|p23.3 Homo sapiens nuclear receptor coactivator 1 (NCOA1), transcript variant 1, mRNA.
12 534 1802 A_16_P16809934 FALSE NM_001042734 SEC24B SEC24 family, member B (S. cerevisiae) ref|NM_001042734|ref|NM_006323 chr4:110599571-110599630 NC_000004.10 110599571 110599630 hs|q25 Homo sapiens SEC24 family, member B (S. cerevisiae) (SEC24B), transcript variant 2, mRNA.
13 534 1800 A_16_P02710869 FALSE NM_173598 KSR2 kinase suppressor of ras 2 ref|NM_173598 chr12:116378641-116378700 NC_000012.10 116378641 116378700 hs|q24.22 Homo sapiens kinase suppressor of ras 2 (KSR2), mRNA.
14 534 1798 A_18_P19118042 FALSE NM_019854 PRMT8 protein arginine methyltransferase 8 ref|NM_019854 chr12:3573195-3573254 NC_000012.10 3573195 3573254 hs|p13.32 Homo sapiens protein arginine methyltransferase 8 (PRMT8), mRNA.
15 534 1796 A_16_P39508815 FALSE NM_025164 QSK serine/threonine-protein kinase QSK ref|NM_025164 chr11:116440207-116440266 NC_000011.8 116440207 116440266 hs|q23.3 Homo sapiens serine/threonine-protein kinase QSK (QSK), mRNA.
16 534 1794 A_16_P57335462 FALSE chr15:75182016-75182075 NC_000015.8 75182016 75182075 hs|q24.3
17 534 1792 A_16_P57574129 FALSE chr17:63433433-63433485 NC_000017.9 63433433 63433485 hs|q24.2
18 534 1790 A_16_P35363008 FALSE NM_014857 RABGAP1L RAB GTPase activating protein 1-like ref|NM_014857 chr1:173032992-173033051 NC_000001.9 173032992 173033051 hs|q25.1 Homo sapiens RAB GTPase activating protein 1-like (RABGAP1L), transcript variant 1, mRNA.
19 534 1788 A_16_P57355883 FALSE AK301640 gb|AK301640 chr15:87811129-87811175 NC_000015.8 87811129 87811175 hs|q26.1 Homo sapiens cDNA FLJ56947 complete cds, highly similar to Homo sapiens Rhesus blood group, C glycoprotein (RHCG), mRNA.
20 534 1786 A_18_P21806865 FALSE chr2:113630804-113630863 NC_000002.10 113630804 113630863 hs|q13

Total number of rows: 974016

Table truncated, full table size 165520 Kbytes.




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