GEO help: Mouse over screen elements for information.
Status
Public on Mar 05, 2010
Title
NimbleGen Mouse 2.1 M array 10 of 10
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus
Manufacturer
NimbleGen
Manufacture protocol
standard NimbleGen protocol, see manufacturer's web site www.nimblegen.com
Description
2007-07-27_MM8_TILE_ChIP_10_HX1 Annotation in this record based on NCBI mouse build 36. Regions of potential H3K27me3 target genes from mm8, isothermal tiling oligos at 100bp
Submission date
Mar 03, 2010
Last update date
Mar 05, 2010
Contact name
Fan Yang
E-mail(s)
fyang@u.washington.edu
Organization name
University of Washington
Street address
1959 NE pacific street
City
Seattle
State/province
WA
ZIP/Postal code
98105
Country
USA
Samples (33)
GSM517917 , GSM517918 , GSM517919 , GSM517920 , GSM1092216 , GSM1092217
GSM1092218 ,
GSM1092219 ,
GSM1092220 ,
GSM1092221 ,
GSM1092222 ,
GSM1092223 ,
GSM1092224 ,
GSM1103480 ,
GSM1103481 ,
GSM1103482 ,
GSM1103483 ,
GSM1103484 ,
GSM1103485 ,
GSM1103486 ,
GSM1103487 ,
GSM1103488 ,
GSM1103489 ,
GSM1103490 ,
GSM1103491 ,
GSM1618331 ,
GSM1618332 ,
GSM1618333 ,
GSM1618334 ,
GSM1618335 ,
GSM1618336 ,
GSM1847271 ,
GSM1847272
Series (7)
GSE20617
ChIP-chip from mouse male and female adult livers and P12.5 embryos with H3K27me3
GSE30761
Mammalian X upregulation
GSE44835
Upregulation of the mammalian X chromosome is associated with enhanced transcription initiation, MOF-mediated H4K16 acetylation, and longer RNA half-life
GSE45390
Protein and histone binding profiles from mouse ES cells during differentiation and after Kdm6a RNAi treatment.
GSE59779
Studies of regulation of mouse X inactivation and genes escaping XCI
GSE66262
Female-specific CTCF binding on the inactive X chromosome in mouse
GSE71903
Nucleophosmin binding on the mouse X chromosomes
Data table header descriptions
ID
PROBE_ID
SEQ_ID
Geneomic region targeted
CHR
Chromosome
RANGE_GB
GenBank Accession number
RANGE_START
Start position on chromosome
LENGTH
length of the probe
RANGE_END
End position on chromosome
SEQUENCE
Sequence of the oligo probe
Data table
ID
SEQ_ID
CHR
RANGE_GB
RANGE_START
LENGTH
RANGE_END
SEQUENCE
CHR18FS040478152
chr18:1-90736837
chr18
NC_000084.4
40478152
50
40478201
CTTAAGCAATGGAGATTGGGAATCTACACTGCTGGAGCAGAACACAGACA
CHR18FS040478267
chr18:1-90736837
chr18
NC_000084.4
40478267
51
40478317
TGCTGAACCAGCCAAGATCTCTCCGTGCTTGTCATTCTTTTTGGTACTAAA
CHR18FS040478357
chr18:1-90736837
chr18
NC_000084.4
40478357
60
40478416
CTCATACACACCCTGGCCTTTCATTTTGATCTGATCATATGTTTCCTGTGACATTTTTCT
CHR18FS040478462
chr18:1-90736837
chr18
NC_000084.4
40478462
63
40478524
CACAGCATATACCATTAACTTGACATAGCATATTGTTTGACTTAGTCATCTGGTACCCTCATT
CHR18FS040478572
chr18:1-90736837
chr18
NC_000084.4
40478572
56
40478627
TTTTTTTTTCATTTGAGTTGTGCTGAGTACATCCTGCTTGAAATTTTAGAAAGGAA
CHR18FS040478661
chr18:1-90736837
chr18
NC_000084.4
40478661
60
40478720
CCAAATCATAAAGCCAAGAATTATGAGCCTGAGATTACAGCAGGCCTGAAAACAAGGTAA
CHR18FS040478772
chr18:1-90736837
chr18
NC_000084.4
40478772
61
40478832
GTTACAGTGAGTAACTACCAGTTCAGTATTAGTGTGTCTCTGACTTCTTCATCTTAGACAT
CHR18FS040479001
chr18:1-90736837
chr18
NC_000084.4
40479001
52
40479052
AGTTTGTGTTTGTTTCTGTGTCTGGTTCTGTGACTTCATGGTTAGCCTTCCT
CHR18FS040479085
chr18:1-90736837
chr18
NC_000084.4
40479085
55
40479139
CAAGTTTGATTTTTGCCATTAGGCAGGATATATAATTTCTTCTTTTTATTTCTTC
CHR18FS040479180
chr18:1-90736837
chr18
NC_000084.4
40479180
51
40479230
CAACAATCCCACTTCTCTCTAAGGCCCTACCCTTTATATACCTTCTGAAGT
CHR18FS040479300
chr18:1-90736837
chr18
NC_000084.4
40479300
57
40479356
CTTGCTAGAACACGAGGCAAATCAATCATAGTCAGTTGTTGTGGACATTGTGAAGTA
CHR18FS040479425
chr18:1-90736837
chr18
NC_000084.4
40479425
50
40479474
ATGACTCAGGGGAGGGATTCCAGGGCTCAATCAAGGCAGGCAAGTCAGGC
CHR18FS040479520
chr18:1-90736837
chr18
NC_000084.4
40479520
50
40479569
AAAGGCTGAAGAAGGCTCATGCTCTGCTAGCTCTCTCCTTTCTACAGAGC
CHR18FS040479625
chr18:1-90736837
chr18
NC_000084.4
40479625
62
40479686
AAAGAATGTAATGAACATAGTCCCTCATGAACATAATCTCTCATAGGTTTGCCTAGAGGCAA
CHR18FS040479720
chr18:1-90736837
chr18
NC_000084.4
40479720
62
40479781
TTCTGGGCTATGCCAGAGTTTGTTGAATTGGAATTTATGTTAAGTATCACACCATCACACAG
CHR18FS040480301
chr18:1-90736837
chr18
NC_000084.4
40480301
59
40480359
GTCAATGTAATTGTTATACTATTGATGGATCTTGCCCTTTGGCTAATTAATAATTCTAG
CHR18FS040481173
chr18:1-90736837
chr18
NC_000084.4
40481173
56
40481228
TCCATCCATTTTAATGATTTTTCAACAAACTATTTTTGCACTTCAACCCTTTATGA
CHR18FS040481258
chr18:1-90736837
chr18
NC_000084.4
40481258
50
40481307
ATTCCGGTAAGGTCTGGAAGTGTGACATCCCCTGTGTCTACAAGCATTGT
CHR18FS040481376
chr18:1-90736837
chr18
NC_000084.4
40481376
55
40481430
TCTTTCCTCCCTCTTATCTGTTCTCTGTTCATGAATTAAGGGACCTTTCCAGTTT
CHR18FS040481476
chr18:1-90736837
chr18
NC_000084.4
40481476
50
40481525
GAACTCATGAGGCTGCTGCAATGAACCTAAGATAGGTGAACCCTAGGAGA
Total number of rows: 2101973 Table truncated, full table size 262591 Kbytes .
Supplementary data files not provided