NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL10129 Query DataSets for GPL10129
Status Public on Mar 05, 2010
Title NimbleGen Mouse 2.1 M array 10 of 10
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol standard NimbleGen protocol, see manufacturer's web site www.nimblegen.com
 
Description 2007-07-27_MM8_TILE_ChIP_10_HX1
Annotation in this record based on NCBI mouse build 36.

Regions of potential H3K27me3 target genes from mm8, isothermal tiling oligos at 100bp
 
Submission date Mar 03, 2010
Last update date Mar 05, 2010
Contact name Fan Yang
E-mail(s) fyang@u.washington.edu
Organization name University of Washington
Street address 1959 NE pacific street
City Seattle
State/province WA
ZIP/Postal code 98105
Country USA
 
Samples (33) GSM517917, GSM517918, GSM517919, GSM517920, GSM1092216, GSM1092217 
Series (7)
GSE20617 ChIP-chip from mouse male and female adult livers and P12.5 embryos with H3K27me3
GSE30761 Mammalian X upregulation
GSE44835 Upregulation of the mammalian X chromosome is associated with enhanced transcription initiation, MOF-mediated H4K16 acetylation, and longer RNA half-life

Data table header descriptions
ID PROBE_ID
SEQ_ID Geneomic region targeted
CHR Chromosome
RANGE_GB GenBank Accession number
RANGE_START Start position on chromosome
LENGTH length of the probe
RANGE_END End position on chromosome
SEQUENCE Sequence of the oligo probe

Data table
ID SEQ_ID CHR RANGE_GB RANGE_START LENGTH RANGE_END SEQUENCE
CHR18FS040478152 chr18:1-90736837 chr18 NC_000084.4 40478152 50 40478201 CTTAAGCAATGGAGATTGGGAATCTACACTGCTGGAGCAGAACACAGACA
CHR18FS040478267 chr18:1-90736837 chr18 NC_000084.4 40478267 51 40478317 TGCTGAACCAGCCAAGATCTCTCCGTGCTTGTCATTCTTTTTGGTACTAAA
CHR18FS040478357 chr18:1-90736837 chr18 NC_000084.4 40478357 60 40478416 CTCATACACACCCTGGCCTTTCATTTTGATCTGATCATATGTTTCCTGTGACATTTTTCT
CHR18FS040478462 chr18:1-90736837 chr18 NC_000084.4 40478462 63 40478524 CACAGCATATACCATTAACTTGACATAGCATATTGTTTGACTTAGTCATCTGGTACCCTCATT
CHR18FS040478572 chr18:1-90736837 chr18 NC_000084.4 40478572 56 40478627 TTTTTTTTTCATTTGAGTTGTGCTGAGTACATCCTGCTTGAAATTTTAGAAAGGAA
CHR18FS040478661 chr18:1-90736837 chr18 NC_000084.4 40478661 60 40478720 CCAAATCATAAAGCCAAGAATTATGAGCCTGAGATTACAGCAGGCCTGAAAACAAGGTAA
CHR18FS040478772 chr18:1-90736837 chr18 NC_000084.4 40478772 61 40478832 GTTACAGTGAGTAACTACCAGTTCAGTATTAGTGTGTCTCTGACTTCTTCATCTTAGACAT
CHR18FS040479001 chr18:1-90736837 chr18 NC_000084.4 40479001 52 40479052 AGTTTGTGTTTGTTTCTGTGTCTGGTTCTGTGACTTCATGGTTAGCCTTCCT
CHR18FS040479085 chr18:1-90736837 chr18 NC_000084.4 40479085 55 40479139 CAAGTTTGATTTTTGCCATTAGGCAGGATATATAATTTCTTCTTTTTATTTCTTC
CHR18FS040479180 chr18:1-90736837 chr18 NC_000084.4 40479180 51 40479230 CAACAATCCCACTTCTCTCTAAGGCCCTACCCTTTATATACCTTCTGAAGT
CHR18FS040479300 chr18:1-90736837 chr18 NC_000084.4 40479300 57 40479356 CTTGCTAGAACACGAGGCAAATCAATCATAGTCAGTTGTTGTGGACATTGTGAAGTA
CHR18FS040479425 chr18:1-90736837 chr18 NC_000084.4 40479425 50 40479474 ATGACTCAGGGGAGGGATTCCAGGGCTCAATCAAGGCAGGCAAGTCAGGC
CHR18FS040479520 chr18:1-90736837 chr18 NC_000084.4 40479520 50 40479569 AAAGGCTGAAGAAGGCTCATGCTCTGCTAGCTCTCTCCTTTCTACAGAGC
CHR18FS040479625 chr18:1-90736837 chr18 NC_000084.4 40479625 62 40479686 AAAGAATGTAATGAACATAGTCCCTCATGAACATAATCTCTCATAGGTTTGCCTAGAGGCAA
CHR18FS040479720 chr18:1-90736837 chr18 NC_000084.4 40479720 62 40479781 TTCTGGGCTATGCCAGAGTTTGTTGAATTGGAATTTATGTTAAGTATCACACCATCACACAG
CHR18FS040480301 chr18:1-90736837 chr18 NC_000084.4 40480301 59 40480359 GTCAATGTAATTGTTATACTATTGATGGATCTTGCCCTTTGGCTAATTAATAATTCTAG
CHR18FS040481173 chr18:1-90736837 chr18 NC_000084.4 40481173 56 40481228 TCCATCCATTTTAATGATTTTTCAACAAACTATTTTTGCACTTCAACCCTTTATGA
CHR18FS040481258 chr18:1-90736837 chr18 NC_000084.4 40481258 50 40481307 ATTCCGGTAAGGTCTGGAAGTGTGACATCCCCTGTGTCTACAAGCATTGT
CHR18FS040481376 chr18:1-90736837 chr18 NC_000084.4 40481376 55 40481430 TCTTTCCTCCCTCTTATCTGTTCTCTGTTCATGAATTAAGGGACCTTTCCAGTTT
CHR18FS040481476 chr18:1-90736837 chr18 NC_000084.4 40481476 50 40481525 GAACTCATGAGGCTGCTGCAATGAACCTAAGATAGGTGAACCCTAGGAGA

Total number of rows: 2101973

Table truncated, full table size 262591 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap