GEO Browser - GEO

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315 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Sus scrofa		TXT
GSE43013	Gene Expression Defines Natural Changes in Mammalian Lifespan	Expression profiling by high throughput sequencing	Acomys cahirinus Bos taurus Canis lupus familiaris Capra hircus Cavia porcellus Chlorocebus aethiops Equus caballus Erinaceus europaeus Felis catus Meles meles Meriones unguiculatus Mesocricetus auratus Murina leucogaster Mus musculus Oryctolagus cuniculus Peromyscus leucopus Petaurus breviceps Rattus norvegicus Suncus murinus Sus scrofa Tadarida brasiliensis Tamias sibiricus Ursus americanus	141	GTF TXT SRA Run Selector	Alexey Fushan	Feb 17, 2015
GSE93855	Comparative transcriptomic analysis provides insights into high-altitude adaptation	Expression profiling by high throughput sequencing	Bos grunniens Bos taurus Capra hircus Gallus gallus Ovis aries Sus scrofa	138	TXT SRA Run Selector	Mingzhou Li	Sep 06, 2017
GSE143848	DNA methylation changes during preimplantation development reveal inter species-differences and reprogramming events at imprinted genes [RNA-Seq]	Expression profiling by high throughput sequencing	Bos taurus Sus scrofa	10	TXT SRA Run Selector	Felix Krueger	May 20, 2020
GSE158412	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (RNA-Seq)	Expression profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	48	TXT SRA Run Selector	Colin Kern	Sep 24, 2020
GSE158430	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	334	BED TXT	Colin Kern	Sep 24, 2020
GSE160028	Long-read RNA sequencing of cattle, pig, and chicken tissues	Expression profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	190	GTF TXT SRA Run Selector	Michelle M Halstead	Jan 01, 2021
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE167580	Comparative 3D Genome Architecture in Vertebrates (RNA-Seq)	Expression profiling by high throughput sequencing	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	29	TXT SRA Run Selector	Mengnan He	Apr 12, 2022
GSE172420	Pluripotent stem cells related to embryonic disc exhibit common self-renewal requirements in diverse livestock species	Expression profiling by high throughput sequencing	Bos taurus Ovis aries Sus scrofa	33	TXT SRA Run Selector	Daniel Spindlow	Nov 15, 2021
GSE152493	Non-viral Induction of Transgene-free iPSCs from Somatic Fibroblasts of Multiple Mammalian Species	Expression profiling by high throughput sequencing	Callithrix jacchus Canis lupus familiaris Homo sapiens Sus scrofa	107	TXT	Sho Yoshimatsu	Oct 01, 2020
GSE135441	Transcriptomes of Major Proximal-Tubule Cell-Culture Models	Expression profiling by high throughput sequencing	Canis lupus familiaris Didelphis virginiana Homo sapiens Mus musculus Rattus norvegicus Sus scrofa	43	TXT SRA Run Selector	Lihe Chen	Oct 14, 2020
GSE162148	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Canis lupus familiaris Cavia porcellus Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	553	HIC TXT	jin long	Apr 20, 2021
GSE71390	The relationship between gene network structure and expression variation among individuals and species	Expression profiling by high throughput sequencing	Carollia perspicillata Monodelphis domestica Mus musculus Sus scrofa	73	FASTA FPKM_TRACKING TXT SRA Run Selector	Marcelo Rivas	Aug 24, 2015
GSE192740	Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (single cells)	Expression profiling by high throughput sequencing	Danio rerio Gallus gallus Homo sapiens Macaca mulatta Mesocricetus auratus Mus musculus Sus scrofa	132	H5 RDS TSV TXT SRA Run Selector	Liesbet Martens	Jan 11, 2022
GSE192742	Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches	Expression profiling by high throughput sequencing	Danio rerio Gallus gallus Homo sapiens Macaca mulatta Mesocricetus auratus Mus musculus Sus scrofa	147	CSV H5 JSON PNG TXT	Liesbet Martens	Jan 11, 2022
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE87776	VRTN Regulates the Number of Thoracic Vertebrae During Vertebrate Development	Expression profiling by high throughput sequencing Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Sus scrofa	13	CEL TAR TXT	Yanyu Dean	Oct 09, 2019
GSE99914	Potential Antigens Involved In Delayed Xenograft Rejection in a GGTA1/CMAH DKO Pig-To-Monkey Model	Expression profiling by high throughput sequencing	Homo sapiens Macaca fascicularis Sus scrofa	6	PDF TXT XLSX SRA Run Selector	junfang zhang	Jul 07, 2019
GSE128992	Identification of renal resident macrophages across species [10X]	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus Sus scrofa	4	TXT SRA Run Selector	Kurt Zimmerman	Apr 05, 2019
GSE128993	Identification of renal resident macrophages across species	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus Sus scrofa	101	TXT	Kurt Zimmerman	Apr 05, 2019