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2575 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Homo sapiens		BW
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	384	BW TXT	Changbin Sun	Jun 11, 2024
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE175615	Conservation and divergence of DNA methylation patterns and functions in vertebrates	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Bos taurus Canis lupus familiaris Gallus gallus Homo sapiens Mus musculus Oryctolagus cuniculus Sus scrofa	62	BW IGV SRA Run Selector	Michael Weber	Mar 23, 2022
GSE98758	Genome-wide DNA accessibility maps and differential gene expression using ChIP-seq, ATAC-seq and RNA-seq for the human secondary fibroblast cell line hiF-T and whole worms with and without knockdown of FACT complex	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	58	BIGWIG BW TSV TXT SRA Run Selector	Scott Allen Lacadie	Aug 29, 2018
GSE224802	spt-2 in C. elegans.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	35	BW	Francesco Nicola Carelli	Feb 09, 2023
GSE249786	Mitochondrial RNA-seq and total RNA-seq of 293T, HeLa, and N2a cells; RIP-seq of SUPV3L1, ceSUPV3L1, ATP5B, and TRAP1; Small RNA-seq of 293T mitochondrial fractions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans Homo sapiens Mus musculus	34	BW CSV TXT	Xu Liu	Dec 19, 2023
GSE114191	Repurposing of promoters and enhancers during mammalian evolution	Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Rattus norvegicus	78	BW SRA Run Selector	Francesco Nicola Carelli	Oct 01, 2018
GSE116862	Chromatin structure dynamics during human cardiomyocyte differention reveals a role of HERV-H in demarcating TAD boundaries.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT SRA Run Selector	Bing Ren	Jul 09, 2019
GSE130871	Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Pan troglodytes	49	BW NARROWPEAK TXT SRA Run Selector	Menno P Creyghton	Dec 20, 2019
GSE186958	Chromatin structure dynamics during human cardiomyocyte differention	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT	Bing Ren	Nov 01, 2021
GSE157490	A high-resolution temporal atlas of the SARS-CoV-2 translatome and transcriptome	Expression profiling by high throughput sequencing Other	Chlorocebus aethiops Homo sapiens Severe acute respiratory syndrome coronavirus 2	127	BW SRA Run Selector	Daehyun Baek	Jul 12, 2021
GSE167075	m6A modification in SARS-CoV-2 virus regulates host cell innate immune response	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Chlorocebus aethiops Homo sapiens Severe acute respiratory syndrome coronavirus 2	16	BEDGRAPH BW XLSX SRA Run Selector	Na Li	Apr 27, 2021
GSE173507	Discovery and functional interrogation of the virus and host RNA interactome of SARS-CoV-2 proteins [RNA-Seq]	Expression profiling by high throughput sequencing	Chlorocebus sabaeus Homo sapiens	4	BW SRA Run Selector	Gene Yeo	Mar 09, 2022
GSE173508	Discovery and functional interrogation of the virus and host RNA interactome of SARS-CoV-2 proteins	Expression profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens	159	BW	Gene Yeo	Mar 09, 2022
GSE186201	A chemically-targetable transcription factor-chromatin remodeler interaction underlies SARS-CoV-2 susceptibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Chlorocebus sabaeus Homo sapiens	85	BROADPEAK BW NARROWPEAK TXT SRA Run Selector	Cigall Kadoch	Oct 11, 2022
GSE188477	Variant specific global loss of cellular m6A RNA methylation during SARS-CoV-2 infection	Expression profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens	28	BW NARROWPEAK TSV TXT SRA Run Selector	Tanmoy Mondal	Feb 07, 2023
GSE241893	Differences in syncytia formation by SARS-CoV-2 variants modify host chromatin accessibility and cellular senescence via TP53	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Chlorocebus sabaeus Homo sapiens	146	BW SF TXT	Jonathan David Lee	Sep 30, 2023
GSE196155	Human centromere repositioning activates transcription and opens chromatin fibre structure [TTseq]	Expression profiling by high throughput sequencing	Cricetulus griseus Homo sapiens	8	BW	Catherine Naughton	Sep 07, 2022
GSE75356	A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Danio rerio Homo sapiens	48	BW NARROWPEAK	Leonard Zon	Feb 01, 2016