GEO Browser - GEO

Series

Samples

Platforms

DataSets

84 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Xenopus tropicalis
GSE14025	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	4	BED TXT SRA Run Selector	Gert Jan Veenstra	Sep 15, 2009
GSE21482	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	3	BED TXT SRA Run Selector	Gert Jan Veenstra	Dec 30, 2010
GSE37452	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	Expression profiling by high throughput sequencing	Xenopus tropicalis	40	TXT SRA Run Selector	Kin Fai Au	May 04, 2012
GSE41338	The evolutionary landscape of alternative splicing in vertebrate species	Expression profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Mus musculus Tetraodon nigroviridis Xenopus tropicalis	21	BW TXT SRA Run Selector	Nuno L Barbosa-Morais	Dec 22, 2012
GSE48663	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency	Expression profiling by high throughput sequencing	Xenopus tropicalis	7	TXT SRA Run Selector	George E. Gentsch	Sep 19, 2013
GSE38605	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Xenopus tropicalis	8	BED SRA Run Selector	Caroline Hill	Sep 23, 2013
GSE43652	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	Expression profiling by high throughput sequencing	Xenopus tropicalis	9	CSV SRA Run Selector	Gert Jan Veenstra	Nov 12, 2013
GSE43520	The evolution of lncRNA repertoires and expression patterns in tetrapods	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Gallus gallus Gorilla gorilla Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	55	BEDGRAPH TXT SRA Run Selector	Anamaria Necsulea	Jan 19, 2014
GSE56242	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	Expression profiling by high throughput sequencing	Xenopus tropicalis	52	TXT SRA Run Selector	Nick Owens	Mar 27, 2014
GSE56169	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	11	TXT SRA Run Selector	Andrea E. Wills	Aug 01, 2014
GSE56000	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	24	TXT SRA Run Selector	Julie C Baker	Sep 17, 2014
GSE53653	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	Expression profiling by high throughput sequencing	Xenopus tropicalis	4	TXT SRA Run Selector	William Chiu	Nov 07, 2014
GSE53654	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	9		William Chiu	Nov 07, 2014
GSE71006	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	Expression profiling by high throughput sequencing	Xenopus tropicalis	18	TXT SRA Run Selector	Ferdinand Marlétaz	Jul 16, 2015
GSE63228	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Xenopus laevis Xenopus tropicalis	11	TXT SRA Run Selector	NELSON LAU	Nov 10, 2015
GSE58420	Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes	Expression profiling by high throughput sequencing	Xenopus laevis Xenopus tropicalis	12	CSV TXT SRA Run Selector	Gabriela Salinas	Dec 09, 2015
GSE67974	Embryonic transcription is controlled by maternally defined chromatin state	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	72	BED BW TXT SRA Run Selector	Saartje Hontelez	Dec 15, 2015
GSE65785	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Expression profiling by high throughput sequencing	Xenopus tropicalis	193	TXT SRA Run Selector	Nick Owens	Jan 07, 2016
GSE68087	Active DNA demethylation at enhancers during the vertebrate phylotypic period	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Mus musculus Xenopus tropicalis	30	BED TXT SRA Run Selector	Ozren Bogdanovic	Jan 29, 2016
GSE72657	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	14	BW TXT SRA Run Selector	Stefan Hoppler	Apr 25, 2016