GEO Browser - GEO

Series

Samples

Platforms

DataSets

907 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Danio rerio		SRA Run Selector
GSE108493	RNA seq analysis of regenerating hearts from three models of successful cardiac regeneration	Expression profiling by high throughput sequencing	Ambystoma mexicanum Danio rerio Mus musculus	54	FASTA SRA Run Selector	Niranjana Natarajan	Feb 01, 2018
GSE141609	Evolution of CpH methylation in vertebrate brains	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera Branchiostoma lanceolatum Callorhinchus milii Danio rerio Gallus gallus Lethenteron camtschaticum Monodelphis domestica Octopus bimaculoides Ornithorhynchus anatinus	11	CGMAP TSV SRA Run Selector	Ryan Lister	Oct 26, 2020
GSE69219	Cyp27c1 red-shifts the spectral sensitivity of photoreceptors by converting vitamin A1 into A2	Expression profiling by high throughput sequencing	Aquarana catesbeiana Danio rerio	12	FA FASTA TXT SRA Run Selector	Jennifer Enright	Oct 17, 2015
GSE52809	Poly(A)-tail profiling reveals an embryonic switch in translational control	Expression profiling by high throughput sequencing	Arabidopsis thaliana Danio rerio Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae Schizosaccharomyces pombe Xenopus laevis	64	TXT SRA Run Selector	Stephen Eichhorn	Jan 29, 2014
GSE183453	R-loop landscapes during parental-to-zygotic transition in zebrafish	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Danio rerio Escherichia coli synthetic construct	60	BW SRA Run Selector	li kuan	May 29, 2024
GSE167580	Comparative 3D Genome Architecture in Vertebrates (RNA-Seq)	Expression profiling by high throughput sequencing	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	29	TXT SRA Run Selector	Mengnan He	Apr 12, 2022
GSE106430	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [RNA-Seq]	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Oryzias latipes	81	TXT SRA Run Selector	Juan J. Tena	Aug 15, 2018
GSE148782	Gain of gene regulatory network interconnectivity at the origin of vertebrates [RNA-seq]	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio	33	TXT SRA Run Selector	Juan J. Tena	Feb 26, 2022
GSE134705	Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program (scRNA-seq)	Expression profiling by high throughput sequencing	Callithrix jacchus Danio rerio Gallus gallus Homo sapiens Macaca fascicularis Mesocricetus auratus Mus musculus Nannospalax galili Ovis aries Rattus norvegicus	37	TXT SRA Run Selector	Ido Amit	Dec 12, 2019
GSE134706	Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program (bulk RNA-seq)	Expression profiling by high throughput sequencing	Callithrix jacchus Danio rerio Gallus gallus Homo sapiens Macaca fascicularis Mesocricetus auratus Mus musculus Ovis aries Rattus norvegicus	44	TXT SRA Run Selector	Ido Amit	Dec 12, 2019
GSE73522	Heart Chamber Evolution Reveals Roles of Gene/Genome Duplications on Continuous Character Evolution in Vertebrates	Expression profiling by high throughput sequencing	Ciona intestinalis Danio rerio Petromyzon marinus	3	FPKM_TRACKING SRA Run Selector	Gang Biao Liu	Sep 28, 2018
GSE14782	Mycobacterium marinum chronic infection of adult zebrafish	Expression profiling by array Expression profiling by high throughput sequencing	Danio rerio	8	XML SRA Run Selector	Anna Magdalena Zakrzewska	Jun 30, 2009
GSE21024	Traf6 function in the innate immune response of zebrafish embryos	Expression profiling by high throughput sequencing	Danio rerio	4	SAM TXT SRA Run Selector	Oliver Stockhammer	Aug 01, 2010
GSE22068	Expanding the MicroRNA Targeting Code: A Novel Type of Site with Centered Pairing	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Danio rerio Homo sapiens	11	TXT SRA Run Selector	Jin-Wu Nam	Jun 25, 2010
GSE22472	Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection	Expression profiling by high throughput sequencing	Danio rerio	4	TXT SRA Run Selector	Oliver Stockhammer	Oct 26, 2010
GSE22830	High-throughput sequencing of mRNA from oocyte, 1 cell, 16/32 cells, 128/256 cells, 3.5hpf and 5.3hpf zebrafish embryos (Wild type; AB line)	Expression profiling by high throughput sequencing	Danio rerio	6	BEDGRAPH GFF SRA Run Selector	Justin Jeyakani Joseph Gnanakkan	Mar 31, 2011
GSE25023	[E-MTAB-308] Zebrafish gene 3 prime end pull down for genome annotation	Expression profiling by high throughput sequencing	Danio rerio	7	SRA Run Selector	European Bioinformatics Institute	Dec 04, 2010
GSE30603	[E-MTAB-434] Transcription profiling by high throughput sequencing of zebra fish tissues and developmental stages	Expression profiling by high throughput sequencing	Danio rerio	7	SRA Run Selector	European Bioinformatics Institute	Jul 14, 2011
GSE30608	[E-MTAB-460] Sanger_zebrafish_sequencing	Expression profiling by high throughput sequencing	Danio rerio	12	SRA Run Selector	European Bioinformatics Institute	Jul 14, 2011
GSE34493	A zebrafish model of intrahepatic cholangiocarcinoma by dual expression of hepatitis B virus X and hepatitis C virus core protein in liver	Expression profiling by high throughput sequencing	Danio rerio	4	TXT SRA Run Selector	Wangta Liu	Dec 02, 2014