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345 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Escherichia coli
GSE144795	The serotonin neurotransmitter modulates virulence of enteric pathogens	Expression profiling by high throughput sequencing	Escherichia coli	2	ASTAR XLSX SRA Run Selector	Aman Kumar	May 08, 2020
GSE98661	Natural RNA polymerase aptamers regulate transcription in E. coli	Other Expression profiling by high throughput sequencing	Escherichia coli	3	BED BW	Philipp Rescheneder	Jun 01, 2017
GSE104505	CRP and FIS	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli str. K-12 substr. MG1655	36	BED	Parul Singh	Oct 03, 2017
GSE153815	Global timeospatial map of RNA polymerase in Escherichia coli	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli	40	BED TXT SRA Run Selector	Thøger Jensen Krogh	Jul 06, 2020
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE174575	Bacterial Heterochromatin Formation Through Liquid-Liquid Phase Separation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	36	BED CSV TSV SRA Run Selector	Lydia Freddolino	Dec 23, 2021
GSE181416	The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli Homo sapiens	46	BED FA TXT	Daniel Sunwook Kim	Aug 04, 2021
GSE217006	Cas9 off-target binding to the promoter of bacterial genes leads to silencing and toxicity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	18	BED	David Bikard	Nov 01, 2022
GSE245749	TnpB homologs exapted from transposons are RNA-guided transcription factors	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Enterobacter cloacae Enterobacter sp. BIDMC93 Escherichia coli	51	BED BW XLSX	Samuel Henry Sternberg	Apr 22, 2024
GSE58285	Direct entry by RNase E is a major pathway for the degradation and processing of RNA in Escherichia coli	Expression profiling by high throughput sequencing	Escherichia coli	6	BEDGRAPH SRA Run Selector	Kenneth McDowall	Jun 10, 2014
GSE88725	Global analysis of translation termination in E. coli using release factor manipulations	Expression profiling by high throughput sequencing Other	Escherichia coli	30	BEDGRAPH SRA Run Selector	Natalie Baggett	Mar 09, 2017
GSE91001	PerC manipulates metabolism and surface antigens in enteropathogenic Escherichia coli	Expression profiling by high throughput sequencing	Escherichia coli Escherichia coli O127:H6 str. E2348/69	6	BEDGRAPH TXT XLS SRA Run Selector	Jay Mellies	Feb 07, 2017
GSE95567	In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding	Expression profiling by high throughput sequencing Other	Escherichia coli	10	BEDGRAPH TAR SRA Run Selector	Danny Incarnato	Jul 19, 2017
GSE159312	Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE)	Expression profiling by high throughput sequencing Other	Escherichia coli	10	BEDGRAPH XLS SRA Run Selector	David Brandt	May 31, 2023
GSE189181	Ubiquitous mRNA decay fragments in E. coli redefine the functional transcriptome	Expression profiling by high throughput sequencing	Bacillus subtilis Escherichia coli synthetic construct	37	BEDGRAPH SRA Run Selector	Lydia Herzel	Apr 25, 2022
GSE48151	Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coliK12 through accurate full-length transcripts assembling	Expression profiling by high throughput sequencing	Escherichia coli	15	BIGWIG SRA Run Selector	Zhengchang Su	Jun 21, 2013
GSE98660	Natural RNA polymerase aptamers regulate transcription in E. coli [3' RACE]	Other Expression profiling by high throughput sequencing	Escherichia coli	2	BW GFF3 SRA Run Selector	Philipp Rescheneder	Jun 01, 2017
GSE183453	R-loop landscapes during parental-to-zygotic transition in zebrafish	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Danio rerio Escherichia coli synthetic construct	60	BW SRA Run Selector	li kuan	May 29, 2024
GSE206872	Induction of neurons from mouse ESC by the bHLH factors Ascl1 and Ngn2 shows distinct genetic dependencies, pluripotency exit, and cell cycle shutdown.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli Mus musculus	64	BW TXT	Gintautas Vainorius	Jul 17, 2023
GSE211736	Joint epigenome profiling reveals cell-type-specific gene regulatory programs in human cortical organoids	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	27	BW FA PICKLE TAB TSV TXT SRA Run Selector	Boyan Bonev	Aug 23, 2023