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1063 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Saccharomyces cerevisiae
GSE29122	Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L (mRNA-Seq data)	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BAM SRA Run Selector	Jacques Rougemont	Jul 01, 2011
GSE29125	Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	25	BAM BIGWIG	Jacques Rougemont	Jul 01, 2011
GSE189063	A transcriptional roadblock protects yeast centromeres	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BAM BW TSV SRA Run Selector	Glennis Amelia Logsdon	Feb 07, 2022
GSE11802	Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays and Ultra High-throughput Sequencing	Expression profiling by high throughput sequencing Expression profiling by genome tiling array	Saccharomyces cerevisiae	24	BAR CEL TXT	Gavin Sherlock	Dec 18, 2008
GSE29294	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	20	BED TXT WIG	Jason D Lieb	Sep 26, 2012
GSE33136	Genome-wide Analysis of Nascent Transcription in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	13	BED SRA Run Selector	Carlos Araya	Nov 01, 2011
GSE36334	Co-dependency of H2B monoubiquitination and nucleosome re-assembly on Chd1	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	10	BED SRA Run Selector	Alexander (Garrett) Garruss	May 02, 2012
GSE48888	Global signatures of protein binding on structural RNAs in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	10	BED SRA Run Selector	Mallory Ann Freeberg	Jul 15, 2013
GSE52000	The Ino80 complex prevents invasion of euchromatin into silent chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	27	BED TXT SRA Run Selector	Siavash K Kurdistani	Jan 22, 2015
GSE52119	Evolution of Translation Regulation in budding Yeast	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces paradoxus Saccharomyces paradoxus	12	BED BEDGRAPH TXT SRA Run Selector	Charles Joel McManus	Dec 04, 2013
GSE53268	Translation rates and 3' ends of S. cerevisiae genes	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	3	BED	David E Weinberg	Dec 19, 2013
GSE53310	3P-seq analysis of S. cerevisiae	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	1	BED SRA Run Selector	David E Weinberg	Dec 19, 2013
GSE54655	RiboMeth-seq: High-throughput mapping of ribose methylations in RNA at single-nucleotide resolution	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	6	BED SRA Run Selector	Nicolai Krogh	Nov 24, 2014
GSE55419	Coordinating Expression of RNA Binding Proteins with Their mRNA Targets	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BED SRA Run Selector	Huifeng Jiang	Jun 01, 2014
GSE55717	Evolution and genetic architecture of chromatin accessibility and function in yeast	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces paradoxus	20	BED SRA Run Selector	Caitlin F Connelly	Jun 01, 2014
GSE58884	Intron evolution in Saccharomycetaceae	Expression profiling by high throughput sequencing	Naumovozyma castellii Saccharomyces cerevisiae Saccharomyces kudriavzevii Saccharomyces uvarum	4	BED TXT SRA Run Selector	Katarzyna B Hooks	Sep 15, 2014
GSE61553	Transcription profiling of a S96xSK1 yeast cross and its pool of spores.	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	8	BED TXT SRA Run Selector	Daniel Magnus Bader	Feb 04, 2015
GSE63517	Break-Seq and RNA-seq analysis of gene expression during and after exposure to hydroxyurea in WT and mec1 cells in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	23	BED TXT	Wenyi Feng	Jan 12, 2015
GSE69696	Psh1-mediated Proteolysis Prevents the Budding Yeast Centromeric Histone Variant from Mislocalizing to Promoter Nucleosomes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	42	BED WIG	Sue Biggins	Mar 08, 2016
GSE70287	The kinase/ATPase Rio1 coordinates yeast metabolism, physiology, growth and cell division at multiple levels	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	9	BED TXT	Peter De Wulf	Jun 14, 2018