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51 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Rattus norvegicus		BW
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE114191	Repurposing of promoters and enhancers during mammalian evolution	Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Rattus norvegicus	78	BW SRA Run Selector	Francesco Nicola Carelli	Oct 01, 2018
GSE78688	Activity-dependent transcriptional changes in human neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus	43	BW SRA Run Selector	Bulent Ataman	Nov 02, 2016
GSE85337	Natural Selection has Shaped Coding and Non-coding Transcription in Primate CD4+ T-cells	Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes Rattus norvegicus	24	BW SRA Run Selector	Charles G Danko	Dec 29, 2016
GSE120081	Profiling of gene expression using RNA-Seq in fibroblasts, iPSCs, iPSC-derived neurons and cells overexpressing Onecut transcription factors	Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	20	BW SRA Run Selector	Kees Albers	Apr 05, 2019
GSE120131	Changes in chromatin accessibility and gene expression induced by overexpression of ONECUT transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	40	BW	Kees Albers	Apr 05, 2019
GSE135538	mRNA sequencing of clinical-grade neural stem cells derived from human ES cells	Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	16	BW TXT SRA Run Selector	Samuel L Pfaff	Aug 08, 2019
GSE154063	Transcriptome profile of ENDOC-BH1 cells and isolated murine islets modulating TFEB expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus	74	BW TXT	Rossella De Cegli	Jul 31, 2023
GSE161241	MiR-124 synergism with ELAVL3 enhances target gene expression to promote neuronal maturity	Other Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	18	BIGWIG BW	Ya-Lin Lu	May 25, 2021
GSE167259	Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	109	BED BW	Wei Wu	Mar 25, 2021
GSE178734	Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits [snRNA-seq]	Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	7	BED BW	Stephen C.J. Parker	Jun 23, 2021
GSE178735	Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	19	BED BROADPEAK BW	Stephen C.J. Parker	Jun 23, 2021
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE198250	High depth profiling of miRNA targets with chimeric eCLIP [eCLIPseq]	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	188	BED BW TSV	Gene Yeo	Jul 30, 2022
GSE198251	High depth profiling of miRNA targets with chimeric eCLIP	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	204	BED BW TSV	Gene Yeo	Jul 29, 2022
GSE112622	LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	10	BW SRA Run Selector	Matthew C Lorincz	Jul 06, 2018
GSE115061	ETV1 activates a rapid conduction transcriptional program in rodent and human cardiomyocytes	Expression profiling by high throughput sequencing	Mus musculus Rattus norvegicus	23	BW SRA Run Selector	Akshay Shekhar	Oct 15, 2018
GSE137563	Sirena1: The most abundant lncRNA in mouse oocytes brings together post-transcriptional regulations and mitochondrial distribution	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Rattus norvegicus	17	BW	Filip Horvat	Sep 30, 2019
GSE158760	ChIP-seq data from pika Epas1 knock in MAF and RNA-seq data from mouse, rat, rabbit and Tibetan pika fibroblasts	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Ochotona curzoniae Oryctolagus cuniculus Rattus norvegicus	18	BW TXT SRA Run Selector	wang jiawen	Sep 29, 2023
GSE178673	Chromatin landscape in perinatal cardiomyocytes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	28	BED BW GTF HIC SRA Run Selector	Zhang Jing	Feb 03, 2023