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41490 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus
GSE181680	RNA-seq analysis of pathogen and host in the early stages of Plague pulmonary infection using a novel dual RNA extraction method	Expression profiling by high throughput sequencing	Yersinia pestis Mus musculus	17	XLSX SRA Run Selector	Inbar Cohen Gihon	Aug 11, 2021
GSE41338	The evolutionary landscape of alternative splicing in vertebrate species	Expression profiling by high throughput sequencing	Xenopus tropicalis Tetraodon nigroviridis Mus musculus Gallus gallus Anolis carolinensis	21	BW TXT SRA Run Selector	Nuno L Barbosa-Morais	Dec 22, 2012
GSE43520	The evolution of lncRNA repertoires and expression patterns in tetrapods	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Xenopus tropicalis Ornithorhynchus anatinus Mus musculus Monodelphis domestica Macaca mulatta Homo sapiens Gorilla gorilla Gallus gallus	55	BEDGRAPH TXT SRA Run Selector	Anamaria Necsulea	Jan 19, 2014
GSE68087	Active DNA demethylation at enhancers during the vertebrate phylotypic period	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis Mus musculus Danio rerio	30	BED TXT SRA Run Selector	Ozren Bogdanovic	Jan 29, 2016
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis Ornithorhynchus anatinus Mus musculus Monodelphis domestica Homo sapiens Gallus gallus Anolis carolinensis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE186158	Single-cell transcriptomic atlas reveals the evolution of immune cells and molecules across multiple vertebrate species	Expression profiling by high throughput sequencing	Xenopus tropicalis Sus scrofa Rattus norvegicus Mus musculus Macaca mulatta Homo sapiens Danio rerio	7	TAR SRA Run Selector	Cangang Zhang	Jan 30, 2023
GSE39673	Geminin regulates the transcriptional and epigenetic status of neuronal fate promoting genes during mammalian neurogenesis	Expression profiling by high throughput sequencing Expression profiling by array	Xenopus laevis Mus musculus	10	CEL TXT	Kristen L Kroll	Dec 06, 2012
GSE52809	Poly(A)-tail profiling reveals an embryonic switch in translational control	Expression profiling by high throughput sequencing	Xenopus laevis Schizosaccharomyces pombe Saccharomyces cerevisiae Mus musculus Homo sapiens Drosophila melanogaster Danio rerio Arabidopsis thaliana	64	TXT SRA Run Selector	Stephen Eichhorn	Jan 29, 2014
GSE87872	Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Mus musculus	48	BW TXT SRA Run Selector	Charles Bradshaw	Jun 12, 2017
GSE130082	NEIL1 and NEIL2 DNA glycosylases protect neural crest development against mitochondrial oxidative stress	Expression profiling by high throughput sequencing	Xenopus laevis Mus musculus	45	TSV	Emil Karaulanov	Sep 16, 2019
GSE132117	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Mus musculus	33	TSV	Martina Brueckner	Jun 04, 2019
GSE166544	The molecular basis of coupling between poly(A)-tail length and translational efficiency	Expression profiling by high throughput sequencing Other	Xenopus laevis Mus musculus Homo sapiens	79	TXT SRA Run Selector	David Bartel	Jul 07, 2021
GSE179530	Proteomic analysis of the pathogen surface in cholera identifies host proteins involved in defense and microbiota recognition	Expression profiling by high throughput sequencing	Vibrio cholerae H1 Mus musculus	22		Matthew K Waldor	Jul 08, 2021
GSE58388	Contribution of Veillonella parvula to Pseudomonas aeruginosa mediated pathogenicity in a murine tumor model system	Expression profiling by high throughput sequencing	Veillonella parvula DSM 2008 Pseudomonas aeruginosa PA14 Mus musculus	12	TXT SRA Run Selector	Denitsa Eckweiler	Nov 06, 2014
GSE43013	Gene Expression Defines Natural Changes in Mammalian Lifespan	Expression profiling by high throughput sequencing	Ursus americanus Tamias sibiricus Tadarida brasiliensis Sus scrofa Suncus murinus Rattus norvegicus Petaurus breviceps Peromyscus leucopus Oryctolagus cuniculus Mus musculus Murina leucogaster Mesocricetus auratus Meriones unguiculatus Meles meles Felis catus Erinaceus europaeus Equus caballus Chlorocebus aethiops Cavia porcellus Capra hircus Canis lupus familiaris Bos taurus Acomys cahirinus	141	GTF TXT SRA Run Selector	Alexey Fushan	Feb 17, 2015
GSE227360	Distinct longevity mechanisms across and within species and their association with aging	Expression profiling by high throughput sequencing	Ursus americanus Tamias sibiricus Petaurus breviceps Peromyscus leucopus Papio anubis Mus musculus Murina leucogaster Macaca fascicularis Castor canadensis	90		Alexander Tyshkovskiy	Jun 01, 2023
GSE77213	High-throughput functional comparison of promoter and enhancer activities	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	unidentified plasmid Mus musculus	60	TXT XLS XLSX SRA Run Selector	Thomas Andy Nguyen	May 23, 2016
GSE117473	Tracing the transitions from pluripotency to germ cell fate with CRISPR screening	Expression profiling by high throughput sequencing Other	unidentified plasmid Mus musculus	52	XLSX SRA Run Selector	Jamie Hackett	Oct 01, 2018
GSE150858	Barcoded viral tracing of single-cell interactions in CNS inflammation	Other Expression profiling by high throughput sequencing	unidentified plasmid Suid alphaherpesvirus 1 Mus musculus	128	CSV TAR TSV TXT ZIP	Michael Wheeler	Apr 22, 2021
GSE202585	Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	unidentified plasmid Mus musculus	38	BW	Ioanna Tiniakou	Apr 12, 2024