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13 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus			SRA Run Selector	Ramesh Shivdasani
GSE128671	Replicational dilution of H3K27me3 in mammalian cells and the role of poised promoters	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	47		BW MTX TSV TXT SRA Run Selector	Ramesh Shivdasani	Jan 17, 2020
GSE70766	Distinct processes and transcriptional targets underlie CDX2 requirements in intestinal stem cells and differentiated villus cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11		BED BW GTF TXT SRA Run Selector	Ramesh Shivdasani	Sep 15, 2015
GSE71713	Acquired tissue-specific promoter bivalency is a basis for PRC2 necessity in adult somatic cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23		BIGWIG BW TXT SRA Run Selector	Ramesh Shivdasani	May 20, 2016
GSE83394	Dynamic Reorganization of Chromatin Accessibility Signatures during Dedifferentiation of Secretory Precursors into Lgr5+ Intestinal Stem Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	49		BW TXT SRA Run Selector	Ramesh Shivdasani	Jun 01, 2017
GSE98724	Transcription factor-dependent ‘anti-repressive’ mammalian enhancers exclude H3K27me3 from extended genomic domains	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	47		BW TXT SRA Run Selector	Ramesh Shivdasani	Jan 11, 2018
GSE99086	Retinoic Acid Related Receptor Orphan Receptor a (RORa) expressing T regulatory cells thwart type-2 cutaneous allergic inflammation	Expression profiling by high throughput sequencing	Mus musculus	15		TXT SRA Run Selector	Ramesh Shivdasani	Mar 26, 2018
GSE111024	Extensive recovery of embryonic enhancer and gene memory stored in hypomethylated enhancer DNA.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	52		BW TXT SRA Run Selector	Ramesh Shivdasani	Mar 14, 2019
GSE115541	Chromatin and tissue plasticity precede commitment to intestinal differentiation during endoderm development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	74		TXT SRA Run Selector	Ramesh Shivdasani	Oct 26, 2018
GSE130681	Distinct mesenchymal cell populations generate the essential intestinal BMP signaling gradient	Expression profiling by high throughput sequencing	Mus musculus	11		CSV MTX TSV SRA Run Selector	Ramesh Shivdasani	Jan 17, 2020
GSE130822	Ascl2-dependent cell differentiation drives regeneration of abated intestinal stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19		BW MTX TSV TXT SRA Run Selector	Ramesh Shivdasani	Jan 17, 2020
GSE160264	Transcription factor-mediated intestinal metaplasia and the role of a shadow enhancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	44		BW CSV SRA Run Selector	Ramesh Shivdasani	Feb 21, 2022
GSE183299	Cell and chromatin transitions in intestinal stem cell regeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22		BW ZIP SRA Run Selector	Ramesh Shivdasani	Jun 07, 2022
GSE184158	Birth and delineation of the intestinal stem cell niche	Expression profiling by high throughput sequencing	Mus musculus	15		ZIP SRA Run Selector	Ramesh Shivdasani	Feb 08, 2023