GEO Browser - GEO

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22144 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus		SRA Run Selector
GSE43013	Gene Expression Defines Natural Changes in Mammalian Lifespan	Expression profiling by high throughput sequencing	Acomys cahirinus Bos taurus Canis lupus familiaris Capra hircus Cavia porcellus Chlorocebus aethiops Equus caballus Erinaceus europaeus Felis catus Meles meles Meriones unguiculatus Mesocricetus auratus Murina leucogaster Mus musculus Oryctolagus cuniculus Peromyscus leucopus Petaurus breviceps Rattus norvegicus Suncus murinus Sus scrofa Tadarida brasiliensis Tamias sibiricus Ursus americanus	141	GTF TXT SRA Run Selector	Alexey Fushan	Feb 17, 2015
GSE71761	Comparing regeneration and fibrosis using Acomys and Mus	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	10	FA TXT XLSX SRA Run Selector	Ashley Seifert	Mar 17, 2016
GSE113081	Comparative Transcriptomic Analysis of Dermal Wound Healing Reveals De Novo Skeletal Muscle Regeneration in Acomys cahirinus	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	24	FASTA TXT SRA Run Selector	Jason Orr Brant	Apr 25, 2019
GSE159938	Symmetry breaking of tissue mechanics in wound induced hair follicle regeneration [bulk RNA-seq]	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	25	TXT SRA Run Selector	Hans I-Chen Harn	Feb 19, 2021
GSE168876	Spiny mice (Acomys cahirinus) activate unique transcriptional programs after severe kidney injuries and regenerate organ function without fibrosis	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	18	XLSX SRA Run Selector	Daryl Okamura	Sep 13, 2021
GSE182141	A subset of pro-inflammatory spiny mice macrophages promotes a regenerative phenotype in mouse fibroblasts	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	10	MTX TSV SRA Run Selector	Steve Potter	Oct 23, 2023
GSE190756	Comparative transcriptomics reveals circadian and pluripotency networks as two pillars of longevity regulation	Expression profiling by high throughput sequencing	Acomys russatus Blarina brevicauda Bramus lutescens Castor canadensis Cavia porcellus Chinchilla lanigera Condylura cristata Cricetulus barabensis Cuniculus paca Fukomys damarensis Heterocephalus glaber Hydrochoerus hydrochaeris Marmota monax Mesocricetus auratus Mus musculus Myocastor coypus Neotoma cinerea Octodon degus Ondatra zibethicus Peromyscus maniculatus Rattus rattus Scalopus aquaticus Sciurus carolinensis Tamias striatus Tamiasciurus hudsonicus	522	TXT SRA Run Selector	jinlong lu	May 18, 2022
GSE84589	Cis-regulatory landscape of four cell types of the retina	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Adeno-associated virus Mus musculus synthetic construct	64	TAB SRA Run Selector	Dirk Schuebeler	Oct 25, 2017
GSE186346	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [Hippocampus]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	25	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE186347	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [P0&P10]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	44	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE108337	Evidence against tetrapod-wide digit identities and for a limited frame shift in bird wings	Expression profiling by high throughput sequencing	Alligator mississippiensis Anolis carolinensis Mus musculus	59	TXT SRA Run Selector	Cong Liang	Jun 30, 2019
GSE34394	Three Distinct Phases of Regeneration-Specific Gene Expression in the Axolotl Blastema	Expression profiling by high throughput sequencing	Ambystoma mexicanum Mus musculus	20	TXT SRA Run Selector	Jeff Nie	Sep 01, 2013
GSE108493	RNA seq analysis of regenerating hearts from three models of successful cardiac regeneration	Expression profiling by high throughput sequencing	Ambystoma mexicanum Danio rerio Mus musculus	54	FASTA SRA Run Selector	Niranjana Natarajan	Feb 01, 2018
GSE41338	The evolutionary landscape of alternative splicing in vertebrate species	Expression profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Mus musculus Tetraodon nigroviridis Xenopus tropicalis	21	BW TXT SRA Run Selector	Nuno L Barbosa-Morais	Dec 22, 2012
GSE60373	A relative shift in cloacal location repositions external genitalia in amniote evolution	Expression profiling by high throughput sequencing	Anolis carolinensis Mus musculus	24	TXT SRA Run Selector	Patrick Tschopp	Aug 14, 2014
GSE65786	Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Anolis carolinensis Mus musculus	61	BED2 TXT SRA Run Selector	Xin Li	Feb 03, 2020
GSE52809	Poly(A)-tail profiling reveals an embryonic switch in translational control	Expression profiling by high throughput sequencing	Arabidopsis thaliana Danio rerio Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae Schizosaccharomyces pombe Xenopus laevis	64	TXT SRA Run Selector	Stephen Eichhorn	Jan 29, 2014
GSE116502	A conserved odor detection pathway via modulation of chromatin and cellular gene expression	Expression profiling by high throughput sequencing	Arabidopsis thaliana Drosophila melanogaster Mus musculus	34	TSV SRA Run Selector	Christi Ann Scott	Jul 28, 2020
GSE104290	Transcriptional Responses in Mouse Models of Invasive Pulmonary Aspergillosis	Expression profiling by high throughput sequencing	Aspergillus fumigatus Mus musculus	11	DIFF FPKM_TRACKING XLSX SRA Run Selector	Shiv D. Kale	Dec 05, 2017
GSE79121	Expression Profiling of Term Placenta in Viviparous Mammals by RNA-Seq	Expression profiling by high throughput sequencing	Ateles fusciceps Bos taurus Canis lupus familiaris Dasypus novemcinctus Loxodonta africana Monodelphis domestica Mus musculus Pan paniscus	8	FASTA FPKM_TRACKING SRA Run Selector	Don Leigh Armstrong	May 12, 2017