GEO Browser - GEO

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125 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus		HIC
GSE71831	Deletion of DXZ4 on the human inactive X chromosome eliminates superdomains and impairs gene silencing	Other Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	101	HIC PDF TSV TXT SRA Run Selector	Miriam Huntley	Jul 19, 2016
GSE82144	Myc regulates chromatin decompaction and nuclear architecture during B cell activation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	258	BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 10, 2017
GSE94452	Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	174	HIC	Bing Ren	May 01, 2018
GSE95116	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BW HIC TXT	Bo Wen	Dec 03, 2017
GSE96693	Loss of CTCF reveals basic properties of post-mitotic epigenomes and induces heart failure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	17	GTF HIC NARROWPEAK	Tom Vondriska	Aug 30, 2017
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE104341	The Peril DNA locus acts as an in vivo enhancer for distal but not proximal genes	Expression profiling by high throughput sequencing Other	Mus musculus synthetic construct	30	HIC TAB TXT SRA Run Selector	Abbie Groff	Nov 02, 2018
GSE107217	Xist Deletional Analysis Reveals an Interdependency between Xist RNA and Polycomb Complexes for Spreading along the Inactive X	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	50	BW HIC TXT SRA Run Selector	Hongjae Sunwoo	Mar 01, 2019
GSE110901	Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	86	HIC NARROWPEAK	Mark Dawson	May 21, 2019
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE112222	BAZ2A safeguards genome architecture of ground-state pluripotent stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	49	BED BW CSV HIC SRA Run Selector	Raffaella Santoro	Oct 20, 2020
GSE112717	Enhancer-dependence of gene expression increases with developmental age	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	BED BW HIC TXT SRA Run Selector	Jialiang Huang	Aug 19, 2020
GSE115862	Antisense lncRNA transcription mediates DNA demethylation to drive stochastic Protocadherin α promoter choice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	72	BW HIC SRA Run Selector	Daniele Canzio	Apr 15, 2019
GSE116649	Megadomains and superloops form dynamically during X-chromosome inactivation but are dispensable for silencing and escape	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	65	BED BEDGRAPH BW HIC XLS XLSX SRA Run Selector	John Edward Froberg	Oct 31, 2018
GSE118912	Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	46	HIC TDF TXT	Jesse Engreitz	Oct 21, 2019
GSE119697	Exploration of CTCF post-translation modifications uncovers Serine-224 phosphorylation by PLK1 at pericentric regions during the G2/M transition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	13	BW HIC TXT SRA Run Selector	Andrea June Kriz	Jan 31, 2019
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE120589	The mole genome reveals regulatory rearrangements associated with adaptive intersexuality	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Talpa occidentalis	70	BEDGRAPH BW HIC	Francisca Martinez Real	Oct 09, 2020
GSE120771	Selective Disruption of Core Regulatory Transcription	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	109	BED HIC TXT	Xinyu Wen	May 31, 2019
GSE121355	A pliable mediator acts as a functional, rather than an architectural bridge, between promoters and enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	201	BEDGRAPH BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 01, 2019