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3229 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Expression profiling by high throughput sequencing	Mus musculus		TSV
GSE182141	A subset of pro-inflammatory spiny mice macrophages promotes a regenerative phenotype in mouse fibroblasts	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	10	MTX TSV SRA Run Selector	Steve Potter	Oct 23, 2023
GSE216723	Injured Mus and Acomys ear tissues at day0 were analyzed using 10X single-cell rna-seq	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	2	MTX TSV	Steve Potter	Jan 23, 2023
GSE228002	Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale [I]	Expression profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens Mus musculus	39	TSV	Asia Mendelevich	Jul 11, 2023
GSE161645	scAAVengr, a transcriptome-based pipeline for quantitative ranking of engineered AAVs with single-cell resolution	Expression profiling by high throughput sequencing	Callithrix jacchus Macaca fascicularis Mus musculus	147	CSV MTX TSV TXT SRA Run Selector	Leah Byrne	Oct 19, 2021
GSE229169	Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate motor cortex	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus	46	MTX TSV	Bing Ren	Oct 31, 2023
GSE192740	Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (single cells)	Expression profiling by high throughput sequencing	Danio rerio Gallus gallus Homo sapiens Macaca mulatta Mesocricetus auratus Mus musculus Sus scrofa	132	H5 RDS TSV TXT SRA Run Selector	Liesbet Martens	Jan 11, 2022
GSE194412	Propyzamide and a pre-clinical model of IBD	Expression profiling by high throughput sequencing	Danio rerio Mus musculus	83	TSV ZIP	Zhaorong Li	Oct 10, 2022
GSE210749	SCENIC+: identification of enhancers and gene regulatory networks using single-cell multiomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	13	TSV	Gert Hulselmans	Apr 17, 2023
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE211736	Joint epigenome profiling reveals cell-type-specific gene regulatory programs in human cortical organoids	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	27	BW FA PICKLE TAB TSV TXT SRA Run Selector	Boyan Bonev	Aug 23, 2023
GSE255296	Single Cell Transcriptomic Profiling of MYBPC3-associated Hypertrophic Cardiomyopathy Across Species Reveals Conserva-tion of Biological Process but Not Gene Expression	Expression profiling by high throughput sequencing	Felis catus Homo sapiens Mus musculus	29	MTX TSV	Samia Ali	Mar 06, 2024
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE128671	Replicational dilution of H3K27me3 in mammalian cells and the role of poised promoters	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	47	BW MTX TSV TXT SRA Run Selector	Ramesh Shivdasani	Jan 17, 2020
GSE134759	The Evolving Immune Microenvironment of Human B-cell Acute Lymphoblastic Leukemia	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	33	MTX TSV	Igor Dolgalev	Jun 08, 2020
GSE137710	Transcriptional basis of mouse and human dendritic cell heterogeneity revealed by single-cell profiling	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	6	TSV SRA Run Selector	Herman Gudjonson	Oct 25, 2019
GSE143148	The histone demethylase JMJD2B regulates endothelial-to-mesenchymal transition [HTS]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED CSV TSV SRA Run Selector	David John	Jan 08, 2020
GSE148349	Transient in vivo base editing with no detectable RNA- and DNA off-target mutations	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	66	TSV SRA Run Selector	Weihong Qi	Aug 24, 2020
GSE148695	SATB2 preserves colon stem cell identity and mediates ileum-colon conversion via enhancer remodeling	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	148	BED BW MTX TSV	Wei Gu	Oct 05, 2021
GSE148716	Tau aggregates are RNA-protein assemblies that mis-localize multiple nuclear speckle components	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	22	CSV TSV SRA Run Selector	Evan Lester	Apr 06, 2021
GSE149180	MYC drives temporal evolution of small cell lung cancer subtypes by reprogramming neuroendocrine fate [SuperSeries]	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	38	MTX TSV	Trudy Oliver	May 28, 2020