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3639 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Expression profiling by high throughput sequencing	Mus musculus		TXT
GSE193472	Optocoder: computational decoding of spatially indexed bead arrays	Expression profiling by high throughput sequencing	unidentified Mus musculus	4	TXT	Nikos Karaiskos	Jun 24, 2022
GSE63473	Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets	Expression profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	203	BAM FASTA GTF TXT	Evan Macosko	May 20, 2015
GSE83992	An improved method for identifying biological circular RNAs	Expression profiling by high throughput sequencing	synthetic construct Mus musculus	12	TXT SRA Run Selector	Wei Yan	Jul 05, 2016
GSE109262	Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	244	TSV TXT SRA Run Selector	Felix Krueger	Jan 17, 2018
GSE115547	Determination of branch point (BP) usage by wild-type and mutant SF3B1 using a minigene library	Expression profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	7	TXT SRA Run Selector	MANOJ PILLAI	Oct 30, 2018
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE198728	Paired single-cell host profiling with multiplex-tagged bacterial mutants reveals intracellular virulence-immune networks	Expression profiling by high throughput sequencing Other	synthetic construct Mus musculus	136	TXT	Noa Bossel Ben-Moshe	Jun 21, 2023
GSE215065	Regulation of mouse chamber selective enhancers	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	synthetic construct Mus musculus	82	BW TXT	Xiaoran Zhang	Jan 30, 2023
GSE233343	A ligation-independent sequencing method reveals tRNA fragments with blocked 3' termini	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	synthetic construct Mus musculus	105	TXT XLSX	Emily Shields	Jun 06, 2023
GSE128992	Identification of renal resident macrophages across species [10X]	Expression profiling by high throughput sequencing	Sus scrofa Rattus norvegicus Mus musculus Homo sapiens	4	TXT SRA Run Selector	Kurt Zimmerman	Apr 05, 2019
GSE128993	Identification of renal resident macrophages across species	Expression profiling by high throughput sequencing	Sus scrofa Rattus norvegicus Mus musculus Homo sapiens	101	TXT	Kurt Zimmerman	Apr 05, 2019
GSE132143	Single cell RNA-seq analysis reveals the crucial role of Collagen triple helix repeat containing 1 (Cthrc1) cardiac fibroblasts for ventricular remodeling after myocardial infarction [RNA-seq]	Expression profiling by high throughput sequencing	Sus scrofa Mus musculus Homo sapiens	185	TXT SRA Run Selector	Silvia C Hernandez	Sep 29, 2020
GSE104785	Salmonella persisters undermine host immune defences during antibiotic treatment	Expression profiling by high throughput sequencing	Salmonella enterica subsp. enterica serovar Typhimurium Mus musculus	18	TXT SRA Run Selector	Peter Hill	Dec 07, 2018
GSE139205	Host metabolic reprogramming during immune activation promotes intracellular bacterial survival (host and bacteria)	Expression profiling by high throughput sequencing	Salmonella enterica subsp. enterica serovar Typhimurium Mus musculus	54	TXT SRA Run Selector	Roi Avraham	Oct 19, 2022
GSE139208	Host succinate is a signal for activation of Salmonella virulence during intracellular infection	Expression profiling by high throughput sequencing	Salmonella enterica subsp. enterica serovar Typhimurium Mus musculus	72	TXT	Roi Avraham	Oct 19, 2022
GSE155658	Postnatal development of Cardiomyocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus rattus Mus musculus	115	BEDGRAPH TXT XLSX SRA Run Selector	Li Wang	May 29, 2022
GSE97047	Wound regeneration deficit in rats correlates with low morphogenetic potential and distinct transcriptome profile of epidermis	Expression profiling by high throughput sequencing	Rattus norvegicus Mus musculus	18	TXT SRA Run Selector	Maksim V Plikus	Jan 03, 2018
GSE101918	Species and Cell-Type Properties of Classically Defined Human and Rodent Neurons and Glia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Rattus norvegicus Mus musculus Homo sapiens	114	TDF TXT	Xiao Xu	Oct 12, 2018
GSE134705	Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program (scRNA-seq)	Expression profiling by high throughput sequencing	Rattus norvegicus Ovis aries Nannospalax galili Mus musculus Mesocricetus auratus Macaca fascicularis Homo sapiens Gallus gallus Danio rerio Callithrix jacchus	37	TXT SRA Run Selector	Ido Amit	Dec 12, 2019
GSE134706	Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program (bulk RNA-seq)	Expression profiling by high throughput sequencing	Rattus norvegicus Ovis aries Mus musculus Mesocricetus auratus Macaca fascicularis Homo sapiens Gallus gallus Danio rerio Callithrix jacchus	44	TXT SRA Run Selector	Ido Amit	Dec 12, 2019