GEO Browser - GEO

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28 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Expression profiling by high throughput sequencing	Mus musculus		BEDGRAPH
GSE66092	PAPERCLIP Identifies MicroRNA Targets and a Role of CstF64/64tau in Promoting Non-canonical poly(A) Site Usage.	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	32	BED BEDGRAPH TXT SRA Run Selector	Hun-Way Hwang	Feb 19, 2016
GSE121355	A pliable mediator acts as a functional, rather than an architectural bridge, between promoters and enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	201	BEDGRAPH BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 01, 2019
GSE197404	Combinatorial effects on gene expression at the Lbx1/Fgf8 locus resolve Split-Hand/Foot Malformation type 3	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	44	BEDGRAPH WIG	Giulia Cova	Feb 22, 2023
GSE43390	Pausing of RNA polymerase II regulates mammalian developmental potential	Expression profiling by high throughput sequencing Other	Mus musculus	12	BEDGRAPH BW SRA Run Selector	Karen Adelman	Mar 12, 2015
GSE58339	A Sox2 distal enhancer cluster regulates embryonic stem cell differentiation potential	Expression profiling by high throughput sequencing	Mus musculus	12	BEDGRAPH SRA Run Selector	Jennifer Mitchell	Nov 19, 2014
GSE62151	Upstream Anti-sense Promoters Act as Local Enhancers of Mammalian Protein-coding Genes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	17	BEDGRAPH BW WIG SRA Run Selector	Karen Adelman	Jun 23, 2015
GSE95826	Tcrd rearrangement redirects a processive Tcra recombination program to expand the Tcra repertoire	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BEDGRAPH TXT SRA Run Selector	Zachary Carico	Jun 06, 2017
GSE97148	Clonally stable Vκ allelic choice instructs Igκ repertoire	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BEDGRAPH TXT SRA Run Selector	Yehudit Bergman	Apr 01, 2017
GSE103247	Qki5 CLIP in E14.5 mouse brain	Expression profiling by high throughput sequencing	Mus musculus	1	BED BEDGRAPH SRA Run Selector	Masato Yano	Dec 08, 2017
GSE103248	RNAseq in control and shQk KD mouse neural stem cells, and Qki5 CLIP in E14.5 mouse brain	Expression profiling by high throughput sequencing	Mus musculus	7	BED BEDGRAPH TXT	Masato Yano	Dec 08, 2017
GSE116649	Megadomains and superloops form dynamically during X-chromosome inactivation but are dispensable for silencing and escape	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	65	BED BEDGRAPH BW HIC XLS XLSX SRA Run Selector	John Edward Froberg	Oct 31, 2018
GSE116798	Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BEDGRAPH FPKM_TRACKING	Shinichiro Chuma	Feb 06, 2020
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE130270	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	149	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	Sep 25, 2019
GSE140975	Wapl repression by Pax5 promotes loop extrusion and V gene recombination at the Igh locus	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	170	BED BEDGRAPH BW HIC TXT SRA Run Selector	Meinrad Busslinger	Jul 01, 2020
GSE142677	AGO HITS-CLIP Reveals Distinct Patterns of miRNA Regulation of Visceral and Brown Adipose Tissue Identity	Other Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	35	BEDGRAPH CSV SRA Run Selector	Sean O'Connor	Dec 28, 2019
GSE151747	eiCLIP analysis of RBFOX2 in primary mouse hepatocytes	Expression profiling by high throughput sequencing	Mus musculus	3	BED BEDGRAPH SRA Run Selector	LMS Bioinformatics Core	Sep 26, 2022
GSE151753	Characterization of the role of RBFOX2 in the liver	Expression profiling by high throughput sequencing	Mus musculus	35	BEDGRAPH	LMS Bioinformatics Core	Sep 26, 2022
GSE160325	Identification of LARP1 targets in naive CD4 T cells [eCLIP]	Expression profiling by high throughput sequencing	Mus musculus	12	BED BEDGRAPH SRA Run Selector	Alison Galloway	May 13, 2021