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54743 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			TXT
GSE119440	Indole signaling at the host-microbiota-pathogen interface	Expression profiling by high throughput sequencing	Escherichia coli O157:H7	4	ASTAR TXT SRA Run Selector	Aman Kumar	Jan 05, 2019
GSE31206	Colistin-resistant, lipopolysaccharide-deficient Acinetobacter baumannii responds to lipopolysaccharide loss through increased expression of genes involved in the synthesis and transport of lipoproteins, phospholipids and poly-beta-1,6-N-acetylglucosamine	Expression profiling by high throughput sequencing	Acinetobacter baumannii	4	BAI BAM TXT SRA Run Selector	Paul Francis Harrison	Aug 11, 2011
GSE33480	RNA-seq from ENCODE/Caltech	Expression profiling by high throughput sequencing	Homo sapiens	24	BAI BAM BIGBED BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Jul 12, 2012
GSE160390	PEZIC_STAG1_Pluripotency	Expression profiling by high throughput sequencing Other	Mus musculus	33	BAI BAM TXT	Suzana Hadjur	Jun 06, 2021
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE24012	Transcriptional profiling of EJC depletion by RNA-Seq using the SOLiD platform (Applied Biosystems)	Expression profiling by high throughput sequencing	Drosophila melanogaster	6	BAM TXT WIG SRA Run Selector	Hugo Lavoie	Oct 20, 2010
GSE27619	Deep sequencing reveals distinct patterns of DNA methylation and transcript isoform regulation in prostate cancer	Expression profiling by array Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BAM TXT	Jung Kim	May 03, 2011
GSE28078	mRNA-Seq of whole flies from Drosophila	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila simulans Drosophila virilis Drosophila yakuba	32	BAM RPKM TXT SRA Run Selector	Brian Oliver	Mar 23, 2011
GSE29184	A draft map of cis-regulatory sequences in the mouse genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	143	BAM BIGWIG BOWTIE TXT	Bing Ren	Jul 01, 2012
GSE29719	mRNA-Seq of central cells from the Arabidopsis thaliana female gametophyte	Expression profiling by high throughput sequencing	Arabidopsis thaliana	2	BAM TXT SRA Run Selector	Marc William Schmid	Jan 26, 2012
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE31728	Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by array	Homo sapiens	67	BAM TXT	Matthew Iyer	Aug 29, 2011
GSE32190	Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (RNA-seq: Thymocytes)	Expression profiling by high throughput sequencing	Mus musculus	7	BAM BEDGRAPH BIGWIG SAM TXT SRA Run Selector	Hilde Schjerven	Sep 08, 2013
GSE32424	Identification of a Novel Angiogenesis and Tumor Suppressor Gene Rab25 in Esophageal Squamous Cell Carcinoma	Expression profiling by high throughput sequencing	Homo sapiens	12	BAM TXT SRA Run Selector	Yunjuan Bao	Dec 05, 2012
GSE32916	Analysis of Pro-Inflammatory Gene Activation and RNA Processing by RNAseq of Nascent Transcripts I	Expression profiling by high throughput sequencing	Mus musculus	15	BAM TXT XLS SRA Run Selector	Stephen Smale	May 03, 2012
GSE33023	mRNA-seq of L1 larvae recovering from arrest	Expression profiling by high throughput sequencing	Caenorhabditis elegans	10	BAM BEDGRAPH BW GTF TXT SRA Run Selector	Colin Maxwell	Apr 25, 2012
GSE33141	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Nrl-/- Retinal Transcriptomes	Expression profiling by high throughput sequencing	Mus musculus	6	BAM TXT XLS SRA Run Selector	HARSHA KARUR RAJASIMHA	Oct 25, 2011
GSE33306	Alternative splicing controlled by heterogeneous nuclear ribonucleoprotein L (hnRNP L) regulates development, proliferation and migration of thymic pre-T cells	Expression profiling by high throughput sequencing	Mus musculus	4	BAM TXT SRA Run Selector	Brian Wilhelm	Apr 24, 2012
GSE33668	Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development	Expression profiling by high throughput sequencing	Sordaria macrospora	8	BAM TXT SRA Run Selector	Minou Nowrousian	Oct 01, 2012
GSE33693	Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BAM BEDGRAPH BIGWIG SAM TXT	Hilde Schjerven	Sep 08, 2013