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20 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			TAB	Shuchang Liu
GSE245549	A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	48	BW MTX TAB TSV	Shuchang Liu	Jun 06, 2024
GSE245540	A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis [Set2.Bulk RNA-Seq retina E14.5 WT and Atoh7 Large Enhancer KO]	Expression profiling by high throughput sequencing	Mus musculus	8	TAB	Shuchang Liu	Jun 06, 2024
GSE245541	A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis [Set3.Bulk RNA-Seq retina E14.5 WT and Atoh7 Remote Enhancer KO]	Expression profiling by high throughput sequencing	Mus musculus	6	TAB	Shuchang Liu	Jun 06, 2024
GSE245546	A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis [Set7.Bulk RNA-Seq P18 Cerebellum WT and Atoh7 Large Enhancer KO]	Expression profiling by high throughput sequencing	Mus musculus	6	TAB	Shuchang Liu	Jun 06, 2024
GSE245547	A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis [Set8.Bulk RNA-Seq P18 Cerebellum WT and Atoh7 remote Enhancer KO]	Expression profiling by high throughput sequencing	Mus musculus	6	TAB	Shuchang Liu	Jun 06, 2024
GSE229884	ADAR1 Zα domain P195A mutation activates the MDA-5 dependent RNA-sensing signaling pathway in the brain enhanced by haploinsufficiency without overall RNA editing level decrease.	Expression profiling by high throughput sequencing	Mus musculus	12	TAB	Shuchang Liu	May 31, 2023
GSE199640	CYR61 orchestrates NASH fibrosis through SYK-NFκB-PDGF signaling in monocyte-derived macrophages	Expression profiling by high throughput sequencing	Mus musculus	18	MTX TAB TSV	Shuchang Liu	Oct 02, 2023
GSE199637	CYR61 orchestrates NASH fibrosis through SYK-NFκB-PDGF signaling in monocyte-derived macrophages [bulk RNA-seq]	Expression profiling by high throughput sequencing	Mus musculus	6	CSV TAB	Shuchang Liu	Oct 02, 2023
GSE226534	Calponin 2 regulates ketogenesis to dictate the outcome of acute kidney injury	Expression profiling by high throughput sequencing	Mus musculus	14	TAB	Shuchang Liu	Oct 02, 2023
GSE220120	Conservation of primordial ~12-hour ultradian gene programs in humans	Expression profiling by high throughput sequencing	Homo sapiens	72	TAB	Shuchang Liu	Aug 07, 2023
GSE197172	Differences in the intrinsic chondrogenic potential of human mesenchymal stromal cells and iPSC-derived multipotent cells	Expression profiling by high throughput sequencing	Homo sapiens	7	MTX TAB TSV	Shuchang Liu	Dec 20, 2022
GSE225217	Effects of the circulating environment of COVID-19 on platelet and neutrophil behavior	Expression profiling by high throughput sequencing	Homo sapiens	10	TAB	Shuchang Liu	Mar 08, 2023
GSE196106	Functional analysis of Vsx2 super-enhancer reveals an autoregulatory network governing Vsx2 expression during retinogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	26	TAB WIG	Shuchang Liu	Jul 13, 2022
GSE196104	Functional analysis of Vsx2 super-enhancer reveals an autoregulatory network governing Vsx2 expression during retinogenesis [RNA-seq_mouse]	Expression profiling by high throughput sequencing	Mus musculus	14	CSV TAB	Shuchang Liu	Jul 13, 2022
GSE185051	Hepatic Transcriptome Profiling of A Multiethnic Cohort of Pediatric Non-Alcoholic Fatty Liver Disease Patients Reveals Novel Genes and Pathways Associated With Disease Stages	Expression profiling by high throughput sequencing	Homo sapiens	57	CSV TAB SRA Run Selector	Shuchang Liu	Mar 25, 2022
GSE197169	Mechanistic study comparing cartilage formation from human mesenchymal stromal cells and iPSC-derived multipotent cells [bulk RNA-seq]	Expression profiling by high throughput sequencing	Homo sapiens	6	TAB XLSX	Shuchang Liu	Dec 20, 2022
GSE200472	NOTCH-YAP1/TEAD-DNMT1 axis drives hepatocyte reprogramming into intrahepatic cholangiocarcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BW TAB WIG	Shuchang Liu	Jul 25, 2023
GSE200471	NOTCH-YAP1/TEAD-DNMT1 axis drives hepatocyte reprogramming into intrahepatic cholangiocarcinoma [bulk RNA-Seq]	Expression profiling by high throughput sequencing	Mus musculus	8	TAB XLSX	Shuchang Liu	Jul 25, 2023
GSE269800	Set6: ERCC bulk short-read RNA-seq by Element Biosciences AVITI platform, additional samples	Expression profiling by high throughput sequencing	synthetic construct	4	TAB TXT	Shuchang Liu	Aug 19, 2024
GSE269801	Set7: ERCC bulk short-read RNA-seq by Illumina NextSeq platform, additional samples	Expression profiling by high throughput sequencing	synthetic construct	9	TAB TXT	Shuchang Liu	Aug 19, 2024