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14353 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			CSV
GSE212109	Epigenetic regulation of profibrotic macrophages in systemic sclerosis- associated interstitial lung disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	17	BAI BED CSV H5 TBI TSV	Tracy Tabib	Sep 02, 2022
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE112479	The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	100	BB BED BW CSV TXT	Bruno Di Stefano	Oct 03, 2019
GSE112782	The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [CLIP-Seq]	Expression profiling by high throughput sequencing Other	Homo sapiens	10	BB BED BW CSV SRA Run Selector	En-Ching Luo	Oct 16, 2019
GSE130044	Direct full-length RNA sequencing reveals unexpected transcriptome complexity during C. elegans development	Expression profiling by high throughput sequencing	Caenorhabditis elegans	3	BB CSV TXT SRA Run Selector	Runsheng Li	Sep 10, 2019
GSE159411	Transcription Factor Protein Interactomes Reveal Genetic Determinants in Heart Disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	95	BB BED BW CSV H5 TXT SRA Run Selector	Deepak Srivastava	Feb 18, 2022
GSE32228	Toward an integrated model of capsule regulation in Cryptococcus neoformans	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Cryptococcus neoformans Cryptococcus neoformans var. neoformans	54	BED CSV CUFF SAM WIG	Brian Clifton Haynes	Dec 10, 2011
GSE34241	RNA-seq-based analysis of the pathogen-induced defense transcriptome in Arabidopsis	Expression profiling by high throughput sequencing	Arabidopsis thaliana	4	BED CSV SRA Run Selector	Stuart Stephen	Jun 01, 2012
GSE41166	A dynamic H3K27ac signature defines VEGF-regulated endothelial enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	32	BED CSV TXT SRA Run Selector	Peter J Park	Mar 31, 2013
GSE41950	Genome-wide localization of exosome components to active promoters and chromatin insulators in Drosophila	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	48	BED CSV SRA Run Selector	Ryan Dale	Jan 29, 2013
GSE43988	The Estrogen receptor alpha regulated NEAT1 long non-coding RNA promotes prostate cancer progression	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	9	BED CSV RPKM	Dimple Chakravarty	Dec 01, 2014
GSE44654	An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes (RNA-Seq)	Expression profiling by high throughput sequencing	Mus musculus	14	BED CSV SRA Run Selector	Christian Roy	Mar 26, 2013
GSE54067	RNA-seq: technical variability and sampling (female)	Expression profiling by high throughput sequencing	Drosophila melanogaster	6	BED CSV SRA Run Selector	Lauren McIntyre	Jan 15, 2014
GSE54068	RNA-seq: technical variability and sampling (male)	Expression profiling by high throughput sequencing	Drosophila simulans	6	BED CSV SRA Run Selector	Lauren McIntyre	Jan 15, 2014
GSE54334	EDD: a program for detection of wide genomic enrichment domains robust against local variations	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	7	BED CSV	Philippe Collas	Apr 25, 2014
GSE58310	Epigenetic programming during monocyte to macrophage differentiation and trained innate immunity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	64	BED CSV WIG SRA Run Selector	Hindrik Kerstens	Sep 26, 2014
GSE60440	DMRT6 coordinates the transition between mitotic and meiotic developmental programs during mamalian spermatogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV SRA Run Selector	Micah Gearhart	Oct 31, 2014
GSE63346	Pre-patterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BED BW CSV SRA Run Selector	Philippe Collas	Sep 04, 2015
GSE66286	Chromatin Response to UV Damage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED CSV TXT SRA Run Selector	Vijay K Tiwari	Oct 10, 2015
GSE66364	PML protein organizes heterochromatin domains where it regulates histone H3.3 deposition by ATRX/DAXX	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	20	BED BW CSV SRA Run Selector	Philippe Collas	Mar 06, 2017