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5820 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			BW
GSE21161	Widespread transcription at neuronal activity-regulated enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	48	BEDGRAPH BW SRA Run Selector	jesse M gray	Apr 15, 2010
GSE28562	Genome-wide RNA expression in muscle-enriched embryos across different mutations.	Expression profiling by high throughput sequencing	Caenorhabditis elegans	11	BB BW	Diane E Trout	Jun 22, 2012
GSE28563	HLH-1 binding in muscle-enriched embryos and RNA expression in muscle-enriched embryos across different mutations	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	15	BB BW	Diane E Trout	Jun 22, 2012
GSE29282	A Hybrid Mechanism of Action for BCL6 in B Cells Defined by Formation of Functionally Distinct Complexes at Enhancers and Promoters	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	46	BED BW TXT WIG SRA Run Selector	Katerina Hatzi	Aug 05, 2013
GSE29714	Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3' UTRs and Near Stop Codons	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	11	BW TXT SRA Run Selector	Christopher E Mason	May 17, 2012
GSE30641	Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BED BW SAM SRA Run Selector	Justin Cotney	Mar 16, 2012
GSE30765	Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA-sequencing	Expression profiling by high throughput sequencing	Mus musculus	12	BW SAM SRA Run Selector	Albert E. Ayoub	Aug 22, 2011
GSE33023	mRNA-seq of L1 larvae recovering from arrest	Expression profiling by high throughput sequencing	Caenorhabditis elegans	10	BAM BEDGRAPH BW GTF TXT SRA Run Selector	Colin Maxwell	Apr 25, 2012
GSE33092	Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration [HT-seq]	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	4	BW GTF SRA Run Selector	Douglas Porter	Apr 28, 2012
GSE33816	RNA-seq analysis of K562 cells (K562-shX) with stable integration of a tet-inducible shRNA targeting a candidate (X) transcription factor from ENCODE/HudsonAlpha-MyersLab	Expression profiling by high throughput sequencing	Homo sapiens	12	BAM BW GTF SRA Run Selector	Anita Bansal	Dec 01, 2011
GSE34519	mRNA-seq and expression profile of mouse ES OS25 cells	Expression profiling by high throughput sequencing	Mus musculus	1	BW SRA Run Selector	Ines de Santiago	Feb 01, 2012
GSE34520	Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ES cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BW	Ines de Santiago	Feb 01, 2012
GSE35005	Epigenetic dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	18	BW SRA Run Selector	Chunsheng Han	Mar 12, 2012
GSE35468	Transcriptome profiling of epidermal differentiation	Expression profiling by high throughput sequencing	Homo sapiens	3	BW SRA Run Selector	Douglas Porter	Feb 02, 2012
GSE35724	Comprehensive analysis of different in vitro insulin resistance models	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	32	BED BW TXT SRA Run Selector	Kinyui Alice LO	Oct 18, 2013
GSE36103	A high throughput in vivo protein-DNA mapping approach reveals principles of dynamic gene regulation in mammals (RNA-Seq)	Expression profiling by high throughput sequencing	Mus musculus	5	BED BW SRA Run Selector	Manuel Garber	Sep 11, 2012
GSE36104	A high throughput in vivo protein-DNA mapping approach reveals principles of dynamic gene regulation in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	122	BED BW TXT	Manuel Garber	Sep 11, 2012
GSE36200	RAMPAGE dataset for the human K562 cell line	Expression profiling by high throughput sequencing	Homo sapiens	1	BED BW SRA Run Selector	Philippe Batut	Aug 30, 2012
GSE36212	Promoter activity profiling throughout the Drosophila life cycle reveals role of transposons in regulatory innovation	Expression profiling by high throughput sequencing	Drosophila melanogaster	36	BED BW TXT SRA Run Selector	Philippe Batut	Aug 30, 2012
GSE36213	Profiling of transcription start site expression in Drosophila and the human K562 cell line using RAMPAGE	Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	37	BED BW	Philippe Batut	Aug 29, 2012