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276 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			BROADPEAK
GSE151013	Mechanistic dissection of dominant AIRE mutations in mouse models reveals evidence for AIRE auto-regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	102	BED BROADPEAK NARROWPEAK	Jakub Abramson	Aug 30, 2021
GSE101546	SETDB1 controls T helper cell lineage integrity by repressing endogenous retroviruses	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	40	BED BROADPEAK TXT SRA Run Selector	Veronique Adoue	Feb 05, 2019
GSE118160	CD4+ T-cell help creates effector memory CTLs with innate and help-independent recall capacities	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BROADPEAK NARROWPEAK	Tomasz Ahrends	Oct 23, 2019
GSE235014	EZH2 mutants in isogenic cell lines	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	28	BROADPEAK BW	Julian Aldana	Jul 17, 2023
GSE221614	Cut&Run and MARS-seq on SU-DIPG13 cells treated Sulfopin/Vorinostat/Sulfopin+Vorinostat or DMSO	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	26	BROADPEAK BW	Danielle Algranati	Jun 24, 2024
GSE130270	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	149	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	Sep 25, 2019
GSE111902	Compendium of CD8+ T cell Data	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	67	BROADPEAK BW NARROWPEAK TSV TXT SRA Run Selector	Robert Anthony Amezquita	Mar 17, 2018
GSE245529	KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Solanum lycopersicum	51	BIGWIG BROADPEAK NARROWPEAK	Jing An	Jul 11, 2024
GSE262006	Temporal constraints on enhancer usage shape the regulation of limb gene transcription	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	123	BROADPEAK BW H5 TXT	Guillaume Andrey	Mar 22, 2024
GSE85631	Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	105	BED BROADPEAK NARROWPEAK	Yen-Sin Ang	Dec 15, 2016
GSE182513	EWS-FLI1 and HOXD13 control tumor cell plasticity in Ewing sarcoma	Expression profiling by high throughput sequencing Other	Homo sapiens	40	BROADPEAK BW NARROWPEAK TXT	April Apfelbaum	Jun 28, 2022
GSE228221	Multi-omics integration identifies progenitor-state specific PBRM1-PIAS1 cooperation in repressing differentiation in epithelial tissue	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	32	BIGWIG BROADPEAK CSV	Xiaomin Bao	Jan 01, 2024
GSE171749	SETDB1/NSD dependent H3K9me3/H3K36me3 dual heterochromatin maintains gene expression profiles by bookmarking poised enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	88	BED BROADPEAK BW HIC TXT SRA Run Selector	Amandine BARRAL	Jan 25, 2022
GSE157091	Loss of UTX/KDM6A and the activation of FGFR3 converge to regulate differentiation gene expression programs in bladder cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	54	BROADPEAK BW NARROWPEAK	Douglas Barrows	Sep 15, 2020
GSE148321	Dietary palmitic acid promotes a prometastatic epigenetic memory related to tumor innervation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	1134	BROADPEAK BW CEL MTX TSV XLS ZIP	Antoni Berenguer-LLergo	Nov 16, 2021
GSE141180	H3K27me3 maintains the transcription program during epigenetic reprogramming in the mouse germ line [ChIP-seq]	Expression profiling by high throughput sequencing	Mus musculus	31	BROADPEAK BW SRA Run Selector	LMS Bioinformatics Core	Sep 27, 2021
GSE141182	H3K27me3 maintains the transcription program during epigenetic reprogramming in the mouse germ line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	49	BROADPEAK BW	LMS Bioinformatics Core	Sep 27, 2021
GSE256299	Conserved helical motifs in the Ikaros IDR mediate NuRD corepressor interaction and transcriptional repression.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	72	BIGWIG BROADPEAK BW NARROWPEAK	LMS Bioinformatics Core	Oct 28, 2024
GSE234699	SMYD5 is a regulator of the mild hypothermia response	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	127	BEDGRAPH BROADPEAK BW H5	Hans Tomas Bjornsson	Jul 26, 2024
GSE242719	Reversible internalization of cytoplasm into the nucleus in senescent cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	55	BROADPEAK BW NARROWPEAK TSV TXT	Dimitrios Botskaris	Sep 12, 2023