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4342 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			BIGWIG
GSE205783	Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	170	BEDGRAPH BIGWIG COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Apr 28, 2023
GSE90599	Che-1 sustains hypoxic response of colorectal cancer cells by affecting Hif-1α stabilization	Expression profiling by high throughput sequencing	Homo sapiens	4	BIGWIG TSV SRA Run Selector	Matteo Pallocca	Jun 12, 2017
GSE212882	5-Hydroxymethylcytosine Profiling of Cell-Free DNA Identifies Bivalent Genes That Are Prognostic of Survival in High-Risk Neuroblastoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	148	BIGWIG TXT	Mark Applebaum	Feb 01, 2024
GSE63058	7q11.23 dosage-dependent dysregulation in the human pluripotent state primes aberrant transcriptional programs in disease-relevant lineages	Expression profiling by array Expression profiling by high throughput sequencing Genome variation profiling by SNP array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	139	BIGBED BIGWIG CEL CYCHP	Giuseppe Testa	Dec 15, 2014
GSE144147	A Balance Between Intermediate Filaments and Microtubules Maintains Nuclear Architecture in the Cardiomyocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	28	BED BIGWIG XLS SRA Run Selector	Julie Heffler	Jan 24, 2020
GSE243316	A CARM1 inhibitor potently suppresses breast cancer both in vitro and in vivo	Expression profiling by high throughput sequencing	Homo sapiens	6	BIGWIG	Jiancheng Ding	Jun 12, 2024
GSE269235	A Constitutive Heterochromatic Region Shapes Genome Organization and Impacts Gene Expression in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Neurospora crassa	23	BEDGRAPH BIGWIG H5 TXT	Andrew David Klocko	Jun 10, 2024
GSE124197	A Genome-wide CRISPR-Based Screen Identifies KAT7 as a Senescence Driver	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	71	BED BIGWIG TXT SRA Run Selector	Yuxuan Zheng	Oct 09, 2020
GSE104690	A Non-canonical BCOR-PRC1.1 Complex Represses Differentiation Programs in Human ESCs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	42	BIGWIG BROADPEAK CSV SRA Run Selector	Micah Gearhart	Jan 11, 2018
GSE109690	A Nucleosome Destabilizing Factor that Facilitates Transcription in Chromatin	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	28	BED BIGWIG BW TXT SRA Run Selector	Jia Fei	Apr 16, 2018
GSE121158	A Pandas complex adapted for piRNA-guided transposon silencing (RNA-seq)	Expression profiling by high throughput sequencing	Drosophila melanogaster	12	BIGWIG TXT SRA Run Selector	Ming Wang	Aug 09, 2019
GSE130042	A Pandas complex adapted for piRNA-guided transposon silencing and heterochromatin formation	Expression profiling by high throughput sequencing Other	Drosophila melanogaster	16	BIGWIG	Ming Wang	Aug 09, 2019
GSE151901	A Polycomb domain found in committed cells impairs differentiation when introduced into PRC1 in pluripotent cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	161	BIGWIG	Robert Kingston	Oct 11, 2021
GSE46807	A TAF4 coactivator function for E proteins that involves enhanced TFIID binding	Expression profiling by high throughput sequencing	Mus musculus	8	BIGWIG TXT SRA Run Selector	Huimin Geng	Jun 06, 2013
GSE104309	A TFIID-SAGA perturbation that targets MYB and suppresses acute myeloid leukemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	36	BIGWIG	Yali XU	Jan 08, 2018
GSE155882	A Transcriptional Switch Governs Fibroblast Activation in Heart Disease	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	56	BED BIGWIG BW CSV MTX TSV WIG SRA Run Selector	Pawel Przytycki	Apr 08, 2021
GSE254090	A cell type-aware framework for nominating non-coding variants in Mendelian regulatory disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	87	BIGWIG BW RESULTS TAR	Elizabeth C Engle	Aug 06, 2024
GSE144475	A chromosomal loop anchor mediates bacterial genome organization	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Bacillus subtilis	30	BIGWIG COOL SRA Run Selector	Gaurav Dugar	Nov 14, 2021
GSE180691	A cohesin traffic pattern genetically linked to gene regulation	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	158	BIGWIG BW	Anne-Laure Valton	Aug 15, 2022
GSE49847	A comparative encyclopedia of DNA elements in the mouse genome	Expression profiling by high throughput sequencing Genome variation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	588	BAM BEDRNAELEMENTS BIGWIG BROADPEAK NARROWPEAK PAIR	ENCODE DCC	Aug 14, 2013