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3375 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			BED
GSE14025	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	4	BED TXT SRA Run Selector	Gert Jan Veenstra	Sep 15, 2009
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE15292	Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	936	BED BEDGRAPH TXT	Kevin P. White	Mar 20, 2009
GSE15780	Interplay between c-Jun and TAp73α/β contributes to the apoptosis-survival balance	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	15	BED TSV TXT SRA Run Selector	Marion Lohrum	Mar 01, 2011
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE18068	Genome-wide transcriptome sequencing at different stages of Drosophila development, RNA-seq	Expression profiling by high throughput sequencing	Drosophila melanogaster	12	BED BEDGRAPH SRA Run Selector	Kevin P. White	Sep 12, 2009
GSE18572	Discrete genomic domains exhibit co-occurrence of H3K9me3 and H3K27me3 histone modifications throughout Drosophila	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	49	BED BEDGRAPH TXT	Kevin P. White	Oct 16, 2009
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE19323	PTB CLIP-seq	Expression profiling by high throughput sequencing	Homo sapiens	4	BED SRA Run Selector	Xiang-Dong Fu	Dec 24, 2009
GSE19325	Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	9	BED BEDGRAPH XLS SRA Run Selector	Dustin E Schones	Apr 16, 2010
GSE19486	Human variation in PolII and NF-KappaB binding	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Pan troglodytes	149	BED TXT	Flora Vaccarino	Mar 22, 2010
GSE19602	Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	24	BED TAR SRA Run Selector	guangming he	Jan 20, 2010
GSE20071	Pol II and its associated epigenetic marks are present at pol III-transcribed non-coding RNA genes (II)	Expression profiling by high throughput sequencing	Homo sapiens	1	BED GRAPH SRA Run Selector	Iouri Chepelev	Apr 25, 2010
GSE20072	Pol II and its associated epigenetic marks are present at pol III-transcribed non-coding RNA genes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	7	BED GRAPH	Iouri Chepelev	Apr 25, 2010
GSE20421	Regulatory Divergence in Drosophila revealed by mRNA-seq	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila melanogaster x Drosophila sechellia Drosophila sechellia	4	BED SRA Run Selector	Brenton R Graveley	Feb 20, 2010
GSE20898	Genome-wide Analyses of Transcription Factor GATA3-Mediated Gene Regulation in Distinct T Cell Types	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	53	BED BEDGRAPH RPKM SRA Run Selector	Brian J Abraham	Aug 26, 2011
GSE21482	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	3	BED TXT SRA Run Selector	Gert Jan Veenstra	Dec 30, 2010
GSE22511	Genome-wide transcription start site determination of Geobacter sulfurreducens under multiple growth conditions	Expression profiling by high throughput sequencing	Geobacter sulfurreducens PCA	3	BED TXT WIG SRA Run Selector	Bernhard Palsson	Jul 01, 2010
GSE22512	Analysis of Geobacter sulfurreducens under multiple growth conditions	Expression profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array Expression profiling by high throughput sequencing	Geobacter sulfurreducens PCA	29	BED PAIR WIG	Bernhard Palsson	Jul 01, 2010