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104560 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing
GSE199499	Single-cell chromatin accessibility profiling reveals a self-renewing muscle satellite cell state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	ARROW FPKM_TRACKING RDS	Yarui Diao	Jun 18, 2023
GSE215824	Alveolar epithelial progenitor cells drive lung regeneration via dynamic changes in chromatin topology modulated by lineage-specific Nkx2-1 activity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	ARROW LOOM RDS	William Zacharias	Oct 19, 2022
GSE240583	Baf155 establishes chromatin priming to promote hematopoietic regeneration and function [single cell multiome - ATAC + GEX]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	ARROW MTX RDS TSV	Changxu Fan	Jul 09, 2024
GSE240585	Baf155 controls hematopoietic differentiation and regeneration through chromatin priming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	ARROW BW MTX TSV	Changxu Fan	Jul 08, 2024
GSE119440	Indole signaling at the host-microbiota-pathogen interface	Expression profiling by high throughput sequencing	Escherichia coli O157:H7	4	ASTAR TXT SRA Run Selector	Aman Kumar	Jan 05, 2019
GSE124940	The Impact of Wheat Rht-B1b Semi-Dwarfing Allele on Photosynthesis and Seed Development under Field Conditions	Expression profiling by high throughput sequencing	Triticum aestivum	24	ASTAR XLSX SRA Run Selector	Michael Giroux	Jan 11, 2019
GSE144795	The serotonin neurotransmitter modulates virulence of enteric pathogens	Expression profiling by high throughput sequencing	Escherichia coli	2	ASTAR XLSX SRA Run Selector	Aman Kumar	May 08, 2020
GSE25840	Widespread RNA and DNA Sequence Differences in the Human Genome	Third-party reanalysis Expression profiling by high throughput sequencing	Homo sapiens		BAI BAM	Mingyao Li	May 19, 2011
GSE29423	Transcriptome analysis of light-utilizing Strain IMCC1322, a member of SAR116 group bacteria	Expression profiling by high throughput sequencing	Candidatus Puniceispirillum marinum IMCC1322	6	BAI BAM SRA Run Selector	Hyun-Myung Oh	May 01, 2020
GSE31206	Colistin-resistant, lipopolysaccharide-deficient Acinetobacter baumannii responds to lipopolysaccharide loss through increased expression of genes involved in the synthesis and transport of lipoproteins, phospholipids and poly-beta-1,6-N-acetylglucosamine	Expression profiling by high throughput sequencing	Acinetobacter baumannii	4	BAI BAM TXT SRA Run Selector	Paul Francis Harrison	Aug 11, 2011
GSE33480	RNA-seq from ENCODE/Caltech	Expression profiling by high throughput sequencing	Homo sapiens	24	BAI BAM BIGBED BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Jul 12, 2012
GSE95430	Single cell RNA-seq of eight thousand epithelium cells from the mammary glands of adult mice	Expression profiling by high throughput sequencing	Mus musculus	2	BAI MTX TSV SRA Run Selector	Gordon K Smyth	Nov 20, 2017
GSE103275	Single cell RNA-seq of mouse mammary gland epithelium cells	Expression profiling by high throughput sequencing	Mus musculus	6	BAI MTX TSV	Gordon K Smyth	Nov 20, 2017
GSE147440	Identification of m6A residues at single nucleotide resolution using eCLIP and an accessible custom analysis pipeline	Expression profiling by high throughput sequencing	Homo sapiens	17	BAI BAM BED XLS SRA Run Selector	Justin Roberts	Dec 31, 2020
GSE160390	PEZIC_STAG1_Pluripotency	Expression profiling by high throughput sequencing Other	Mus musculus	33	BAI BAM TXT	Suzana Hadjur	Jun 06, 2021
GSE209747	Identification and Characterization of a MAPT-targeting Locked Nucleic Acid Antisense Oligonucleotide Therapeutic for Tauopathies III	Expression profiling by high throughput sequencing	Homo sapiens	1	BAI BAM	Amy Easton	Aug 07, 2022
GSE212109	Epigenetic regulation of profibrotic macrophages in systemic sclerosis- associated interstitial lung disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	17	BAI BED CSV H5 TBI TSV	Tracy Tabib	Sep 02, 2022
GSE184161	test1	Expression profiling by high throughput sequencing	Mus musculus	1	BALLC BCI SRA Run Selector	Pierre X Ledoux	Sep 28, 2021
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009